Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_C02
(621 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.5
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.3
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 7.3
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.2
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Frame = +2
Query: 218 GYCSDHGGSIGVSYDGS----------SDCVGDDCWAR-DHIHAGLVRNRSWSDDGSTVS 364
G+ + S+ V++DGS S C D W D H + + SW+ DG+ V
Sbjct: 82 GFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDDQHCDM-KFGSWTYDGNQVD 140
Query: 365 QVTQGTFFQPVSMTVTSKYWCSVG 436
V +S +T+ W +G
Sbjct: 141 LVLSSETGGDLSDFITNGEWYLIG 164
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.2
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Frame = +2
Query: 218 GYCSDHGGSIGVSYDGS----------SDCVGDDCWAR-DHIHAGLVRNRSWSDDGSTVS 364
G+ + S+ V++DGS S C D W D H + + SW+ DG+ V
Sbjct: 82 GFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDDQHCDM-KFGSWTYDGNQVD 140
Query: 365 QVTQGTFFQPVSMTVTSKYWCSVG 436
V +S +T+ W +G
Sbjct: 141 LVLSSETGGDLSDFITNGEWYLIG 164
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.2
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Frame = +2
Query: 218 GYCSDHGGSIGVSYDGS----------SDCVGDDCWAR-DHIHAGLVRNRSWSDDGSTVS 364
G+ + S+ V++DGS S C D W D H + + SW+ DG+ V
Sbjct: 82 GFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDDQHCDM-KFGSWTYDGNQVD 140
Query: 365 QVTQGTFFQPVSMTVTSKYWCSVG 436
V +S +T+ W +G
Sbjct: 141 LVLSSETGGDLSDFITNGEWYLIG 164
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.2
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Frame = +2
Query: 218 GYCSDHGGSIGVSYDGS----------SDCVGDDCWAR-DHIHAGLVRNRSWSDDGSTVS 364
G+ + S+ V++DGS S C D W D H + + SW+ DG+ V
Sbjct: 82 GFDGTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHCDM-KFGSWTYDGNQVD 140
Query: 365 QVTQGTFFQPVSMTVTSKYWCSVG 436
V +S +T+ W +G
Sbjct: 141 LVLSSETGGDLSDFITNGEWYLIG 164
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.5
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Frame = +2
Query: 218 GYCSDHGGSIGVSYDGS----------SDCVGDDCWAR-DHIHAGLVRNRSWSDDGSTVS 364
G+ + S+ V++DGS S C D W D H + + SW+ DG+ V
Sbjct: 82 GFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDDQHCDM-KFGSWTYDGNQVD 140
Query: 365 QVTQGTFFQPVSMTVTSKYWCSVG 436
V +S +T+ W +G
Sbjct: 141 LVLSSETGGDLSDFITNGEWYLIG 164
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.3
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +2
Query: 269 SDCVGDDCWAR-DHIHAGLVRNRSWSDDGSTVSQVTQGTFFQPVSMTVTSKYWCSVG 436
S C D W D H + + SW+ DG+ V V +S +T+ W +G
Sbjct: 109 STCKIDITWFPFDDQHCDM-KFGSWTYDGNQVDLVLSSETGGDLSDFITNGEWYLIG 164
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.3
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +2
Query: 269 SDCVGDDCWAR-DHIHAGLVRNRSWSDDGSTVSQVTQGTFFQPVSMTVTSKYWCSVG 436
S C D W D H + + SW+ DG+ V V +S +T+ W +G
Sbjct: 177 STCKIDITWFPFDDQHCDM-KFGSWTYDGNQVDLVLSSETGGDLSDFITNGEWYLIG 232
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.3
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +2
Query: 269 SDCVGDDCWAR-DHIHAGLVRNRSWSDDGSTVSQVTQGTFFQPVSMTVTSKYWCSVG 436
S C D W D H + + SW+ DG+ V V +S +T+ W +G
Sbjct: 177 STCKIDITWFPFDDQHCDM-KFGSWTYDGNQVDLVLSSETGGDLSDFITNGEWYLIG 232
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.4 bits (43), Expect = 7.3
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -3
Query: 121 TPYAHHAGLFHSAPLVHSSPLVH 53
TP HH + H +H++P H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHH 433
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,173
Number of Sequences: 438
Number of extensions: 2550
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -