Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_C01
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14... 50 2e-06
05_01_0021 - 148084-148191,148387-148488,148641-148727,148845-14... 46 4e-05
09_04_0736 - 19815427-19815642,19815782-19816903,19817006-198177... 30 2.4
12_02_1219 + 27096477-27096590,27096704-27097078 29 5.5
05_06_0194 + 26287854-26288233,26289810-26290044 28 7.2
05_04_0181 + 18799445-18799593,18801112-18801163,18801964-188019... 28 7.2
03_05_0630 + 26260159-26260272,26260520-26260894 28 7.2
01_06_0525 - 30014497-30014731,30015509-30015573 28 7.2
06_03_0304 + 19315546-19315656,19315780-19315938,19316045-193161... 28 9.6
>01_01_0020 +
147147-147313,148450-148548,148634-148742,148856-148927,
149056-149061,150811-150915,151048-151539,151629-152025,
152178-153646,154010-154450,154543-155214
Length = 1342
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/105 (26%), Positives = 54/105 (51%)
Frame = -3
Query: 755 ILVKYTLFNVGSAPAVEVKLVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNK 576
+ V L+N GSA A +V + D+ + + F +V G+++ ++R+ P SH + +
Sbjct: 44 LAVSLDLYNQGSATAYDVSINDDTWPKEAFELVSGEMSKTLERLDPGVTASHAFVLETKV 103
Query: 575 YGYFNFSSAEVTYKASEDATDVQYSISSAPGEGAIVAFKDYDRKF 441
G F S A +TY+ A +Q + S+ ++A + ++KF
Sbjct: 104 QGRFQGSPAVITYRVPTKAA-LQEAYSTPILALDVLAERPPEKKF 147
>05_01_0021 -
148084-148191,148387-148488,148641-148727,148845-148979,
149109-149324,149772-150043,151346-151394,151521-151526,
151657-151728,152077-152185,152272-152370,153186-153364
Length = 477
Score = 45.6 bits (103), Expect = 4e-05
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Frame = -3
Query: 755 ILVKYTLFNVGSAPAVEVKLVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNK 576
+ V L+N GSA A +V L D+ + + F ++ G + ++++ P SH + +
Sbjct: 48 LAVTLNLYNQGSATAYDVSLNDDSWPQEAFQLISGTTSKIVEKLDPGATASHNFILETKV 107
Query: 575 YGYFNFSSAEVTYKA-SEDATDVQYSISSAPGEGAIVAFKDYDRKF 441
G F S A +TY+ ++ A YS P + I+A + +KF
Sbjct: 108 QGKFQGSPAIITYRVPTKAALQEAYSTPMFPLD--ILAERPPQQKF 151
>09_04_0736 -
19815427-19815642,19815782-19816903,19817006-19817707,
19817808-19817855,19817959-19818201,19819035-19819391
Length = 895
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 329 VLKASHIC-SLMSTRGQMEWLGTGGS*LRMPPNRGYARRTFYHNL*RLRWL 478
VL +C +RG+ EWL TG R P +GY R N + W+
Sbjct: 183 VLGGQELCVDFQRSRGRAEWLETGSFNGRTGPAKGYGVRNRESNPTNVLWV 233
>12_02_1219 + 27096477-27096590,27096704-27097078
Length = 162
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 328 GFESFS--YLLFDEYQRPNGMARDGRVITANAAQSR 429
GF +FS + D + NG DGR IT N AQSR
Sbjct: 52 GFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQSR 87
>05_06_0194 + 26287854-26288233,26289810-26290044
Length = 204
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 189 IYGCTNIVYVFVYKKSCYPTAEVIFF 112
+ GC IV V +Y C PTAE + +
Sbjct: 158 VRGCDRIVPVDIYVPGCPPTAEALLY 183
>05_04_0181 +
18799445-18799593,18801112-18801163,18801964-18801999,
18802098-18802233,18802313-18802512
Length = 190
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 656 GGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTY 537
GG TA+ + Q + +T + YGY NFS EV +
Sbjct: 150 GGSSTAQHEIGPSQLDEPPPITQPTQDYGYINFSGVEVAH 189
>03_05_0630 + 26260159-26260272,26260520-26260894
Length = 162
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 328 GFESFS--YLLFDEYQRPNGMARDGRVITANAAQSR 429
GF +FS + D + NG DGR IT N AQSR
Sbjct: 52 GFVTFSSEQSMRDAIEGMNGKELDGRNITVNEAQSR 87
>01_06_0525 - 30014497-30014731,30015509-30015573
Length = 99
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 189 IYGCTNIVYVFVYKKSCYPTAEVIFF 112
+ GC IV V +Y C PTAE + +
Sbjct: 53 VRGCDRIVPVDIYVPGCPPTAEALLY 78
>06_03_0304 +
19315546-19315656,19315780-19315938,19316045-19316105,
19316620-19316690,19318323-19318622,19319160-19319798,
19320772-19320831
Length = 466
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 203 YLFNKFMAVQI*SMFLYIKKVVTRLPKLSFSCDCVN 96
YL++ M Q+ + ++ KVV K F CDC N
Sbjct: 128 YLYDWVMRTQLMLGWFFLLKVVELWTKRKFRCDCGN 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,928,973
Number of Sequences: 37544
Number of extensions: 399876
Number of successful extensions: 1000
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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