Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_C01
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   3.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.7  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/42 (23%), Positives = 24/42 (57%)
 Frame = -1

Query: 253 IVYFWLNNVLITAIDFNIYLINLWLYKYSLCFCI*KKLLPDC 128
           +VY +L+   +     N+++INL +  + + FC+   ++ +C
Sbjct: 73  VVYIFLSTKSLRTPS-NLFVINLAISNFLMMFCMSPPMVINC 113


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/42 (23%), Positives = 24/42 (57%)
 Frame = -1

Query: 253 IVYFWLNNVLITAIDFNIYLINLWLYKYSLCFCI*KKLLPDC 128
           +VY +L+   +     N+++INL +  + + FC+   ++ +C
Sbjct: 39  VVYIFLSTKSLRTPS-NLFVINLAISDFLMMFCMSPPMVINC 79


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 697 SFTSTAGALPTLNNVYFTSISI 762
           S TSTAG  PT      TS+SI
Sbjct: 721 SRTSTAGQFPTNVATTVTSMSI 742


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,777
Number of Sequences: 438
Number of extensions: 4505
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)