Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_B22
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical ...   122   3e-28
L19639-1|AAC37168.1|  253|Caenorhabditis elegans homeobox protei...    31   0.99 
L19248-1|AAB04137.1|  253|Caenorhabditis elegans homeobox protei...    31   0.99 
AF047658-5|AAC04416.3|  434|Caenorhabditis elegans Hypothetical ...    31   0.99 
AC006605-9|AAK85445.1|  253|Caenorhabditis elegans Abnormal cell...    31   0.99 
U00040-5|AAA50666.1|  934|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF036693-11|AAK29788.1|  392|Caenorhabditis elegans Hypothetical...    28   6.9  
Z75530-6|CAA99790.1|  720|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U27312-13|AAA68256.1|  162|Caenorhabditis elegans Hypothetical p...    27   9.2  
AF217185-1|AAF20162.1|  720|Caenorhabditis elegans UNC-112 protein.    27   9.2  

>AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical
           protein Y37D8A.10 protein.
          Length = 180

 Score =  122 bits (293), Expect = 3e-28
 Identities = 62/173 (35%), Positives = 93/173 (53%), Gaps = 1/173 (0%)
 Frame = -1

Query: 550 TAEAAKI-NKWDGAAAKNAVDDAIREVMTGDLKCKESFALIDGRLFXXXXXXXXXXXXXL 374
           T E  K+ NKWDG   KNA+D+ +++++   +   ES  L++ RL               
Sbjct: 2   TDEPVKVVNKWDGPTVKNALDEVVKKILNDKVGWTESHNLMNLRLLISFIGVAFSAFACG 61

Query: 373 WDYLYPFPQSRLVLIICVSSYFILMGILTLYTTFKEKGIFVVAKEKVGNNTRVWEASSYV 194
           +DY  PFP+S++VL +C  SYFI MGIL +Y  + EK     A E  G  +R W  SS +
Sbjct: 62  YDYYEPFPKSKIVLAVCSVSYFICMGILQMYQWYVEKDCIYEATEVDGKQSRKWAWSSEI 121

Query: 193 KKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYH 35
           K HDDKY L    +   G + +  +TKS   +ID +G ++  +V  E+  LY+
Sbjct: 122 KAHDDKYTLSAEFK-KEGRSGQGKITKSIGAYIDNDGEIIVPLVKKEVDDLYN 173


>L19639-1|AAC37168.1|  253|Caenorhabditis elegans homeobox protein
           protein.
          Length = 253

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = -3

Query: 308 HTDGYFDPLHYIQREGHLCGSQGEGWK*HQGLGSQFLCEETR**IQSRNCYARHEWQHSR 129
           H   Y+DP    Q   +   SQG G   +  LG Q LC      + S      H+W+H  
Sbjct: 66  HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKHLE 119

Query: 128 GIRD 117
           G  D
Sbjct: 120 GDDD 123


>L19248-1|AAB04137.1|  253|Caenorhabditis elegans homeobox protein
           protein.
          Length = 253

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = -3

Query: 308 HTDGYFDPLHYIQREGHLCGSQGEGWK*HQGLGSQFLCEETR**IQSRNCYARHEWQHSR 129
           H   Y+DP    Q   +   SQG G   +  LG Q LC      + S      H+W+H  
Sbjct: 66  HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKHLE 119

Query: 128 GIRD 117
           G  D
Sbjct: 120 GDDD 123


>AF047658-5|AAC04416.3|  434|Caenorhabditis elegans Hypothetical
           protein K03H6.5 protein.
          Length = 434

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 12  SFFSAARLWYSLVISLDTMF*TTVPFTSMKLAN 110
           ++FSAA +W+ L +SL+ +     PF S+ + N
Sbjct: 122 NWFSAAAIWFVLAVSLERLLIIKFPFRSLDVHN 154


>AC006605-9|AAK85445.1|  253|Caenorhabditis elegans Abnormal cell
           lineage protein 39 protein.
          Length = 253

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = -3

Query: 308 HTDGYFDPLHYIQREGHLCGSQGEGWK*HQGLGSQFLCEETR**IQSRNCYARHEWQHSR 129
           H   Y+DP    Q   +   SQG G   +  LG Q LC      + S      H+W+H  
Sbjct: 66  HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKHLE 119

Query: 128 GIRD 117
           G  D
Sbjct: 120 GDDD 123


>U00040-5|AAA50666.1|  934|Caenorhabditis elegans Hypothetical
           protein C18H2.4 protein.
          Length = 934

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +2

Query: 119 HGCLASVAIRVSHNNYEIVFIIVFLHIRTGFPDPGVISNLLLGYH 253
           HG  AS+ I     NY  +  I+  H  T   DP V+SNL  G H
Sbjct: 826 HGVYASILIE-DKTNYPTLVSIITTHGGTIVVDPKVLSNLNQGSH 869


>Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical
           protein T20B3.1 protein.
          Length = 608

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 142 HSCLA*QLRDCIYHRVSSHKNWLPRPW 222
           HS L  QL+  + +R  +HKNWL   W
Sbjct: 50  HSELGAQLQSALENRAKNHKNWLEDWW 76


>AF036693-11|AAK29788.1|  392|Caenorhabditis elegans Hypothetical
           protein C49A9.1 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -1

Query: 268 EKGIFVVAKEKVGNNTRVWEASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDV 89
           E G F     K  +N + WE   Y  K +   N  +V+ + NGN  +  +T +  N+   
Sbjct: 280 ELGYFFEGIFKQKSNGK-WECEQYNNKIEPLINGTVVINEYNGN-EKVELTTTVTNYKPK 337

Query: 88  NGT 80
           N T
Sbjct: 338 NNT 340


>Z75530-6|CAA99790.1|  720|Caenorhabditis elegans Hypothetical
           protein C47E8.7 protein.
          Length = 720

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = -1

Query: 247 AKEKVGNNTRVWE--ASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGTVV 74
           A  K+ N+  V E  +S YV++   K  +   + D +GN R+ + T++   +I     + 
Sbjct: 548 AAVKLPNDFNVDEYISSKYVRRARSKQQIQQRVSDAHGNVRQLTATEAKLQYIRAWQALP 607

Query: 73  QNIVSNEITKLYHSRAAE 20
           ++ +   I +  ++R AE
Sbjct: 608 EHGIHYFIVRFRNARKAE 625


>U27312-13|AAA68256.1|  162|Caenorhabditis elegans Hypothetical
           protein F26A1.14 protein.
          Length = 162

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = -1

Query: 211 EASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITK 44
           E S   K   + +  +I++R   G+ + +++ +   N  + NG +V+N VSN IT+
Sbjct: 15  EISDIQKCLVEGHRTIILIRGVTGSGK-STLARELVNHSE-NGVIVKNDVSNNITR 68


>AF217185-1|AAF20162.1|  720|Caenorhabditis elegans UNC-112 protein.
          Length = 720

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = -1

Query: 247 AKEKVGNNTRVWE--ASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGTVV 74
           A  K+ N+  V E  +S YV++   K  +   + D +GN R+ + T++   +I     + 
Sbjct: 548 AAVKLPNDFNVDEYISSKYVRRARSKQQIQQRVSDAHGNVRQLTATEAKLQYIRAWQALP 607

Query: 73  QNIVSNEITKLYHSRAAE 20
           ++ +   I +  ++R AE
Sbjct: 608 EHGIHYFIVRFRNARKAE 625


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,796,545
Number of Sequences: 27780
Number of extensions: 306384
Number of successful extensions: 773
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)