Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_B19
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   3.8  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    26   6.6  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    26   6.6  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 546  KAQTLILYFGHVDLNLYWAFYVYLQVSCKT 457
            K  +L+L FG  D  LY+    YL   CKT
Sbjct: 1714 KISSLMLIFGKQDNILYYVKLFYLSEICKT 1743


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 661 RLTTVVSTQTIILEHEHVYFGLHRLS 584
           RLT + + +   LE++H+Y  L RLS
Sbjct: 206 RLTKLRTEKKTFLEYQHIYNDLERLS 231


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -1

Query: 573 EFVFFFFVRKAQTLILYFGHVDLNLYWAFYVYLQVSCK 460
           EF+ F ++RK   +   FG+   +  +  Y ++  +CK
Sbjct: 236 EFISFQYIRKMSEIFNSFGNFAADELFTQYGFIDTACK 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,310
Number of Sequences: 5004
Number of extensions: 53002
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)