Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_B19
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0782 + 24537212-24537490                                         31   0.98 
12_01_1000 + 10138260-10138652,10138832-10139017,10139190-101394...    29   5.2  
12_01_0002 - 4477-6144,6571-7440                                       28   9.1  
11_01_0003 - 6099-7766,8193-9062                                       28   9.1  

>06_03_0782 + 24537212-24537490
          Length = 92

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 608 LFWITSTVVYCANLCFFFL 552
           + W+  +VV  ANLCFFFL
Sbjct: 68  VLWVVESVVVLANLCFFFL 86


>12_01_1000 +
           10138260-10138652,10138832-10139017,10139190-10139463,
           10139815-10140065
          Length = 367

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 650 GSVDPNDHFGARTRLFWITSTVVYCANLCFFFLSEKRKRS 531
           G V+ ++    +  L   T+T+  C +L FFF   ++KRS
Sbjct: 309 GHVEQHEELTGKRGLVLTTTTLKLCNHLPFFFKPRRKKRS 348


>12_01_0002 - 4477-6144,6571-7440
          Length = 845

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 517 TKVQNERLRFSDKKKKHKFAQYTTVDVIQNKRVRAPK*SFGSTLPSLVAKRSSMD 681
           TK  +E      +KKKH+  + TT   ++ + V A K SF   L  L+    S D
Sbjct: 456 TKDDDEEQPEQTRKKKHQCPRQTTRSTMRRRLVAAAKCSFSLGLAVLLGLLFSSD 510


>11_01_0003 - 6099-7766,8193-9062
          Length = 845

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 517 TKVQNERLRFSDKKKKHKFAQYTTVDVIQNKRVRAPK*SFGSTLPSLVAKRSSMD 681
           TK  +E      +KKKH+  + TT   ++ + V A K SF   L  L+    S D
Sbjct: 456 TKDDDEEQPEQTRKKKHQCPRQTTRSTMRRRLVAAAKCSFSLGLAVLLGLLFSSD 510


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,457,634
Number of Sequences: 37544
Number of extensions: 305083
Number of successful extensions: 690
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)