Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_B12
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   8.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   8.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = -3

Query: 147  YIFPEDEMVRPNLKLLAAAKNWRKQQEIPQSTQNEKDDNDEE 22
            Y  P D+    + KL+    + + QQ+ PQ  Q ++     +
Sbjct: 1477 YAVPTDKKSACDSKLIVDHSSQKTQQQQPQQQQQQQQQQQPQ 1518


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = -3

Query: 456 LERTVHVKVWLSYAKFELNAENADNINVELARRVYERAN 340
           ++R     +   Y+   +N   +  IN+E  ++VY++ N
Sbjct: 471 VQRAAKCIIGKDYSLPMVNHSKSSRINIERMKQVYQQLN 509


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 660 YGPENCVTWIKF 625
           +GP  C TWI F
Sbjct: 93  FGPRFCDTWIAF 104


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 468 YERLLERTVHVKVWLSY 418
           Y  LL + VHV +W+ +
Sbjct: 50  YLHLLYQDVHVMIWIGF 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,656
Number of Sequences: 438
Number of extensions: 4499
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)