Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_B10
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 38 0.002
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 36 0.009
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 31 0.19
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 27 2.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.3
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch... 27 4.1
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 27 4.1
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 26 5.4
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 26 5.4
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|... 26 5.4
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 26 7.1
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 26 7.1
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 7.1
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb... 26 7.1
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po... 25 9.4
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 37.5 bits (83), Expect = 0.002
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Frame = -1
Query: 524 GLKHIFNQIQETIT-PFLNEDLNDLSLFLSSPIIPMLALTGCLGSGRHLVVKTLAKYNGI 348
GL+ QI++ + PF N +L F P +L L G G+G+ +V++ +A
Sbjct: 283 GLQAQIAQIRDIVELPFQNPEL--FKFFNIMPPRGVL-LYGPPGTGKTMVMRAVAAEANA 339
Query: 347 NCLSIDCNALQSSTAKQTESKINATIQKAKAAAPVIVLLDNFEVL 213
+ID ++ +TES++ + A+A P I+ +D + L
Sbjct: 340 QVFTIDGPSVVGKYLGETESRLRKIFEDARAHQPSIIFIDEIDAL 384
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = -1
Query: 413 LTGCLGSGRHLVVKTLAKYNGINCLSIDCNALQSSTAKQTESKINATIQKAKAAAPVIVL 234
L G G + + K +A G+N +++ L ++E + QKA+ A+P ++
Sbjct: 587 LYGPPGCSKTITAKAIATETGLNFIAVKGPELFDKFVGESERAVRQVFQKARQASPSVIF 646
Query: 233 LDNFEVLNNN 204
D + L N
Sbjct: 647 FDEIDALTAN 656
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 35.5 bits (78), Expect = 0.009
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Frame = -1
Query: 524 GLKHIFNQIQETITPFLNEDLNDLSLFLSSPIIPM--LALTGCLGSGRHLVVKTLAKYNG 351
G+ + QI+E + + L + LFL I P + L G G+G+ L+ + +A G
Sbjct: 133 GVGGLNEQIRE-LREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAASLG 191
Query: 350 INCLSIDCNALQSSTAKQTESKINATIQKAKAAAPVIVLLDNFEVLNNNTFS 195
+N L + +A+ ++ I AK P ++ +D + + FS
Sbjct: 192 VNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGRRFS 243
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 31.1 bits (67), Expect = 0.19
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -1
Query: 422 MLALTGCLGSGRHLVVKTLAKYNGINCLSIDCNALQSSTAKQTESKINATI--QKAKAAA 249
++ LTG G+G+ + +A G L I NA TA K+++ I A ++
Sbjct: 418 IMMLTGLAGAGKTTLAHVIAHQAGYKVLEI--NASDDRTAHTVHEKVSSAISNHSALSSQ 475
Query: 248 PVIVLLDNFE 219
P V++D +
Sbjct: 476 PTCVIVDEID 485
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 27.5 bits (58), Expect = 2.3
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Frame = -1
Query: 512 IFNQIQETITPFLNEDLN-DLSLFLSSPIIPMLALTGCL--GSGRHLVVKTLAK--YNGI 348
IF+ + + ++D+N DLSL IP L G L S R + + + Y +
Sbjct: 1110 IFSSLPVIVMGVYDQDVNADLSLR-----IPQLYKRGILQLNSARKIFIGYMLDGFYQSV 1164
Query: 347 NCLSIDCNALQSSTAKQTESKINATIQK--AKAAAPVIVLLDNFEVLNNNTFSI 192
C + + T + +Q AAP I+++D + +LN + + +
Sbjct: 1165 ICFFFSFLVINNVTTAAQNGRDTMAVQDLGVYVAAPTIMVVDTYVILNQSNWDV 1218
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/46 (30%), Positives = 29/46 (63%)
Frame = -1
Query: 488 ITPFLNEDLNDLSLFLSSPIIPMLALTGCLGSGRHLVVKTLAKYNG 351
ITPF+ ++L +++ S+ + P+L + G SG+ +++ +AK G
Sbjct: 875 ITPFVQKNLLNIARACSTRMFPIL-IQGPTSSGKTSMIEYVAKKTG 919
>SPBC19F8.06c |meu22||amino acid permease, unknown
11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 482 PFLNEDLNDLSLFLSSPIIPMLALTGCLGSG 390
P ED DL L + M+A+ GC+G+G
Sbjct: 49 PLQPEDTQDLQRKLKPRHMQMIAIGGCVGTG 79
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -1
Query: 788 TTXYHCKYLDLVESTGKLYFKCTKLTSDLEIDGNPTTSN 672
T K LDLV+S+ + F K+TS L N TTSN
Sbjct: 386 TNEEEAKLLDLVKSSYRSSFHTKKMTS-LFTHNNHTTSN 423
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = -1
Query: 653 YFIVRRVTQLTLGENIHATKPQDKYFKPQGFDDNLHMLELCPTGLKHIFNQIQETITPFL 474
Y + ++ T G +I + +D Y + DD H++ P+ L+H+ + L
Sbjct: 267 YIVYEKMHNHTAGLDIAFYENRDIYHTRK--DDINHLM---PSSLRHMMYTASNAVKNLL 321
Query: 473 NEDLNDLSLF 444
N+ +DL+ F
Sbjct: 322 NDSKSDLTKF 331
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 590 QDKYFKPQGFDDNLHMLELCPTGLKHIFNQIQET-ITPFLNEDLNDL 453
QD YF DDN +LE K+ QI T ++PFL + ++ L
Sbjct: 1280 QDAYFDSDVLDDNTLILEQEKFERKYEVAQILRTFVSPFLYQTISYL 1326
>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 145
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 515 ALIQLGRVLACVNYHQILVA*NIYLVALLHEYSLLKLVGSH 637
+L+ L ++C + H I + +L + SLLK+VG H
Sbjct: 25 SLVYLVNFISCPSIHSIPFHISTHLTSCQANISLLKIVGLH 65
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -1
Query: 713 TSDLEID-GNPTTSNNKVIKPYFIVRRVTQLTLGENIHATKPQDKYFKPQGFDDNLHMLE 537
++DLE +P T + + + +FI RV QL N H P D ++H+
Sbjct: 879 SNDLERQPSSPDTVHPGIKRSHFIRERVKQLLSDANKHHQSPSDSETDRTPDSSSIHLPH 938
Query: 536 LCPTGLKH 513
+ L H
Sbjct: 939 IERLNLFH 946
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 25.8 bits (54), Expect = 7.1
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = -1
Query: 542 LELCPTGLKHIFNQIQETITPFLNEDLNDLSLFLSSPIIPMLALTGCLGSGRHLVVKTLA 363
LE+ P G +I ++ + PF+NE ++L L L + + L+ +
Sbjct: 444 LEINPEGPNYINLDLKNKVRPFINEVRRSITLEFHEEQNKSLKLQEHVDTVNDLIAELQD 503
Query: 362 KYNGI----NCLSIDCNALQSSTAKQTESKINATIQK 264
+ GI + +CN L+ TA + ++ +A K
Sbjct: 504 ELRGIESRLTSVLSECNMLR-ETASEEKNAFDAESDK 539
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 455 LSLFLSSPIIPMLALTGCLGSGRHLVVKTLAKY 357
+SL L IIP L C +G H++ K +AK+
Sbjct: 565 ISLLLKI-IIPSLTTLACDNNGTHVLQKCIAKF 596
>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 596 KPQDKYFKPQGFDDNLHML 540
K + YFKPQ FD+ +H L
Sbjct: 40 KIRSSYFKPQTFDEFVHCL 58
>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 428 IPMLALTGCLGSGRHLVVKTLAKYNGINCL 339
+P + LTG L SG+ VV+ L +G N +
Sbjct: 1 MPTVGLTGPLCSGKDAVVEYLETKHGFNAI 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,076
Number of Sequences: 5004
Number of extensions: 61445
Number of successful extensions: 159
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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