Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_B10
         (791 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome as...    36   0.044
AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog...    36   0.044
AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.       36   0.044
AL117203-4|CAB55106.2|  813|Caenorhabditis elegans Hypothetical ...    33   0.18 
AF059715-1|AAF05624.1|  813|Caenorhabditis elegans cell survival...    33   0.18 
AF016440-3|AAB65906.1|  443|Caenorhabditis elegans Proteasome re...    29   2.9  
Z93387-1|CAB07651.1|  376|Caenorhabditis elegans Hypothetical pr...    29   5.0  

>AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome
           assembly factor protein6 protein.
          Length = 720

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 21/83 (25%), Positives = 40/83 (48%)
 Frame = -1

Query: 422 MLALTGCLGSGRHLVVKTLAKYNGINCLSIDCNALQSSTAKQTESKINATIQKAKAAAPV 243
           +L +TG  GSG+ L+ +  A     N   +D   +    A  +E+K  +  +KAK     
Sbjct: 260 VLLVTGASGSGKRLMSRVFASETHRNFFEVDGYEMVCENASTSEAKWTSWWEKAKLLQNC 319

Query: 242 IVLLDNFEVLNNNTFSIILCKLL 174
           ++ + N  VL  + F+ +  ++L
Sbjct: 320 VLFIRNSNVLAIDQFNALDRRIL 342


>AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog
           protein.
          Length = 720

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 21/83 (25%), Positives = 40/83 (48%)
 Frame = -1

Query: 422 MLALTGCLGSGRHLVVKTLAKYNGINCLSIDCNALQSSTAKQTESKINATIQKAKAAAPV 243
           +L +TG  GSG+ L+ +  A     N   +D   +    A  +E+K  +  +KAK     
Sbjct: 260 VLLVTGASGSGKRLMSRVFASETHRNFFEVDGYEMVCENASTSEAKWTSWWEKAKLLQNC 319

Query: 242 IVLLDNFEVLNNNTFSIILCKLL 174
           ++ + N  VL  + F+ +  ++L
Sbjct: 320 VLFIRNSNVLAIDQFNALDRRIL 342


>AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.
          Length = 720

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 21/83 (25%), Positives = 40/83 (48%)
 Frame = -1

Query: 422 MLALTGCLGSGRHLVVKTLAKYNGINCLSIDCNALQSSTAKQTESKINATIQKAKAAAPV 243
           +L +TG  GSG+ L+ +  A     N   +D   +    A  +E+K  +  +KAK     
Sbjct: 260 VLLVTGASGSGKRLMSRVFASETHRNFFEVDGYEMVCENASTSEAKWTSWWEKAKLLQNC 319

Query: 242 IVLLDNFEVLNNNTFSIILCKLL 174
           ++ + N  VL  + F+ +  ++L
Sbjct: 320 VLFIRNSNVLAIDQFNALDRRIL 342


>AL117203-4|CAB55106.2|  813|Caenorhabditis elegans Hypothetical
           protein Y48C3A.7 protein.
          Length = 813

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -1

Query: 398 GSGRHLVVKTLAKYNGINCLSIDCNALQSSTAKQTESKINATIQKAKAAAPVIVLLDNFE 219
           G G+ +  + +A    I  L +    L S  + +TE KI      AK  +P I++LD+ +
Sbjct: 249 GCGKTMFAQAVAGELAIPMLQLAATELVSGVSGETEEKIRRLFDTAKQNSPCILILDDID 308

Query: 218 VL 213
            +
Sbjct: 309 AI 310


>AF059715-1|AAF05624.1|  813|Caenorhabditis elegans cell survival
           CED-4-interactingprotein MAC-1 protein.
          Length = 813

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -1

Query: 398 GSGRHLVVKTLAKYNGINCLSIDCNALQSSTAKQTESKINATIQKAKAAAPVIVLLDNFE 219
           G G+ +  + +A    I  L +    L S  + +TE KI      AK  +P I++LD+ +
Sbjct: 249 GCGKTMFAQAVAGELAIPMLQLAATELVSGVSGETEEKIRRLFDTAKQNSPCILILDDID 308

Query: 218 VL 213
            +
Sbjct: 309 AI 310


>AF016440-3|AAB65906.1|  443|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 2 protein.
          Length = 443

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/72 (23%), Positives = 29/72 (40%)
 Frame = -1

Query: 413 LTGCLGSGRHLVVKTLAKYNGINCLSIDCNALQSSTAKQTESKINATIQKAKAAAPVIVL 234
           L GC G+G+ L+ K +A       L I  + L           +    + A+  AP IV 
Sbjct: 227 LYGCPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPKMVRELFRVAEENAPSIVF 286

Query: 233 LDNFEVLNNNTF 198
           +D  + +    +
Sbjct: 287 IDEIDAVGTKRY 298


>Z93387-1|CAB07651.1|  376|Caenorhabditis elegans Hypothetical
           protein T02E9.1 protein.
          Length = 376

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 22/76 (28%), Positives = 40/76 (52%)
 Frame = -1

Query: 542 LELCPTGLKHIFNQIQETITPFLNEDLNDLSLFLSSPIIPMLALTGCLGSGRHLVVKTLA 363
           + +C   +K I ++++ TI  ++   L  LSLFL SP++    +T    SG++ V     
Sbjct: 126 MAICHPEIKRI-HEMRHTI--YITTILATLSLFLISPVVLSARVTS-FKSGQYFVSAKNE 181

Query: 362 KYNGINCLSIDCNALQ 315
           ++  I  + ID  AL+
Sbjct: 182 RHEVIRQMCIDGMALE 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,478,012
Number of Sequences: 27780
Number of extensions: 335754
Number of successful extensions: 905
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)