Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_B08
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1443 + 26575172-26575181,26575709-26575805,26575900-265759... 384 e-107
01_01_1232 - 9966448-9966708,9966818-9966928,9967142-9967176,996... 175 4e-44
10_08_0036 + 14325793-14326457,14326610-14328035 31 1.5
04_03_0824 + 20086639-20087263,20087282-20087463,20087569-200877... 30 2.7
04_03_0916 + 20794240-20794246,20794585-20796545 29 4.6
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 29 6.1
04_03_0914 + 20788103-20789642,20790036-20790529 29 6.1
01_06_0272 - 28065896-28065991,28066069-28066227,28066918-280669... 28 8.1
>07_03_1443 +
26575172-26575181,26575709-26575805,26575900-26575985,
26576073-26576117,26576788-26576918,26577016-26577126,
26577215-26577472
Length = 245
Score = 384 bits (944), Expect = e-107
Identities = 178/242 (73%), Positives = 208/242 (85%)
Frame = -3
Query: 763 MAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIG 584
MA R+QFENN EVGVFSKLTN YCLVAIGGSENFYS FE+ELA+ IPV+ S+GG RIIG
Sbjct: 1 MATRIQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPVVKTSIGGTRIIG 60
Query: 583 RMTVGNKNGLLVPSSTTDTESQHIRNSLPENVKLQRVEERLSALGNVIACNDYVALVHPD 404
R+ VGNKNGLL+P +TTD E QH+RN LP+ V +QR++ERLSALGN +ACND+VAL HPD
Sbjct: 61 RLCVGNKNGLLLPHTTTDQELQHLRNCLPDQVVVQRIDERLSALGNCVACNDHVALTHPD 120
Query: 403 LDKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQVP 224
LDK TEE++AD L VEVFRQTIAGN+LVGSY A++NRGGLVHP T+I+D DELS+LLQVP
Sbjct: 121 LDKATEELIADVLGVEVFRQTIAGNILVGSYCAITNRGGLVHPHTSIEDLDELSTLLQVP 180
Query: 223 LVAGTVNRGSDVVAAGMVVNDWCAFCGLDTTSTEISVIESVFKLNDAKPTAITXTMRAAR 44
LVAGTVNRGS+V+AAGM VNDW AFCG DTT+TE+SVIESVFKL + +P AI MR +
Sbjct: 181 LVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREGQPAAIVDDMRKSL 240
Query: 43 ID 38
ID
Sbjct: 241 ID 242
>01_01_1232 -
9966448-9966708,9966818-9966928,9967142-9967176,
9967469-9967599,9967683-9967779,9967907-9967916
Length = 214
Score = 175 bits (426), Expect = 4e-44
Identities = 78/115 (67%), Positives = 99/115 (86%)
Frame = -3
Query: 400 DKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQVPL 221
D+ TEEI++D L VEVFRQTIAGN+LVGS+ A SN+GGLVHP+T+++DQ ELS+LL+VPL
Sbjct: 90 DQGTEEIISDVLGVEVFRQTIAGNILVGSFCAFSNKGGLVHPQTSVEDQAELSTLLEVPL 149
Query: 220 VAGTVNRGSDVVAAGMVVNDWCAFCGLDTTSTEISVIESVFKLNDAKPTAITXTM 56
AG++NRGS+VVAAGM VNDW AFCG DTT+TE+SV+ESVF+L D +P A+ M
Sbjct: 150 AAGSINRGSEVVAAGMAVNDWAAFCGADTTATELSVVESVFRLRDGRPGALGADM 204
Score = 139 bits (336), Expect = 3e-33
Identities = 75/192 (39%), Positives = 119/192 (61%), Gaps = 13/192 (6%)
Frame = -3
Query: 763 MAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIG 584
MA RV+FEN++E+GVF++LTN YC++ GG+ENF+SVFE+ELA+ +PV+ S+GG RIIG
Sbjct: 1 MASRVRFENSSEIGVFARLTNAYCVLPDGGAENFFSVFESELADVVPVVRTSIGGTRIIG 60
Query: 583 RMTVGNKNGLLVPSSTTDTESQHIRNSLPENVKLQRVEE-------RLSALGNVI----- 440
RM VGNKNGLL+P +TTD E QH++NSLP+ + + + R + GN++
Sbjct: 61 RMCVGNKNGLLLPHTTTDQELQHLKNSLPDQGTEEIISDVLGVEVFRQTIAGNILVGSFC 120
Query: 439 ACNDYVALVHPDLDKDTEEILADTLNVEVFRQTI-AGNVLVGSYTALSNRGGLVHPKTNI 263
A ++ LVHP + + L+ L V + +I G+ +V + A+++ T
Sbjct: 121 AFSNKGGLVHPQTSVEDQAELSTLLEVPLAAGSINRGSEVVAAGMAVNDWAAFCGADTTA 180
Query: 262 QDQDELSSLLQV 227
+ + S+ ++
Sbjct: 181 TELSVVESVFRL 192
>10_08_0036 + 14325793-14326457,14326610-14328035
Length = 696
Score = 30.7 bits (66), Expect = 1.5
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 4/145 (2%)
Frame = -3
Query: 694 CLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIGRMTVGNKNGLLVPSSTTDTESQH 515
CL A G + L I ++ ++ R IG T N + + V + D E+Q
Sbjct: 408 CLSASGDHQLHRLDSRQGLLAGIAQVNKAIKDARHIGDRT-SNIDVIKVQAGNLDEEAQR 466
Query: 514 IRNSLPENVKLQRVEERLSALGN----VIACNDYVALVHPDLDKDTEEILADTLNVEVFR 347
I+ +P N + VE LGN + A +Y ++ D D+ EI+ +N E
Sbjct: 467 IQELVPSNFNIIGVEVMHPQLGNRSYAIGAQQNYESMKTYLKDADSFEIVIAFVNSE--- 523
Query: 346 QTIAGNVLVGSYTALSNRGGLVHPK 272
+A + + + + R G +HP+
Sbjct: 524 GMLAYDCVWKFCISSTPRSGCLHPR 548
>04_03_0824 +
20086639-20087263,20087282-20087463,20087569-20087724,
20087867-20087989,20088079-20088247,20088384-20088466,
20088641-20088742,20089246-20089359,20089735-20089811,
20089884-20089962,20090060-20090128,20090235-20090410,
20090460-20090561,20090678-20090768,20090878-20090976,
20091141-20091326
Length = 810
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -3
Query: 349 RQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQV 227
R + A ++G A S+ GLVHP T+ Q +SS QV
Sbjct: 73 RPSAAAAAVLGEPVAASDDHGLVHPSTDFASQALVSSTQQV 113
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = -3
Query: 610 SVGGCRIIGRMTVGNKNGLLVPSSTTDTESQHIRNSLPENVKLQRVEERLSALGNVIAC 434
S GGC + + + SS TD E+ HIR + E + Q V +R +G + AC
Sbjct: 244 SNGGCSVWHNELLNIRKNQCTGSSNTDGETFHIRLAAQE-LYSQEVNKRGMVIGVLSAC 301
>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 116 RNLS*CCVQSAECTPIVDHHSSSYDITASVNC 211
+N+ CC + A T ++ HS S D+ NC
Sbjct: 1158 KNIQDCCEEVAGVTSLILEHSESMDLLPKRNC 1189
>04_03_0914 + 20788103-20789642,20790036-20790529
Length = 677
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -3
Query: 610 SVGGCRIIGRMTVGNKNGLLVPSSTTDTESQHIRNSLPENVKLQRVEERLSALGNVIACN 431
S GGC I + + SS TD E+ HIR + E + ++ +R+ +G VI+ +
Sbjct: 398 SNGGCSIWHNELLNIRKSQCSDSSNTDGEALHIRLA-AEELYSKKANKRVMVIGVVISAS 456
>01_06_0272 -
28065896-28065991,28066069-28066227,28066918-28066966,
28067350-28067474,28067834-28068004,28068222-28068571,
28069322-28069478
Length = 368
Score = 28.3 bits (60), Expect = 8.1
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Frame = -3
Query: 589 IGRMTVGNKNGLLVPSSTTDTESQHIRNSLPENVK-LQRVEERLSALGNVIA--CNDYVA 419
I + + G +P + ++ S NS NV L+R E ++ V C D +
Sbjct: 121 IYKTSTSEGGGAQLPPPSINSSSLLPGNSFHSNVTVLKRAFEIATSQTQVEQPMCLDCMR 180
Query: 418 LVHPDLDKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDE 248
L+ +DK+ E++ AD EV Q + S+T LS+ G K I+++++
Sbjct: 181 LLSDKMDKEIEDVNADIKAYEVCLQHLEQE----SHTVLSD-AGFQKEKLKIEEEEK 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,768,729
Number of Sequences: 37544
Number of extensions: 484586
Number of successful extensions: 1262
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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