Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_B04
(737 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 30 0.020
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 28 0.11
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 28 0.11
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 27 0.14
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 25 0.56
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 24 1.3
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 2.3
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 23 4.0
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 22 5.2
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 22 5.2
DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 22 6.9
DQ435334-1|ABD92649.1| 135|Apis mellifera OBP17 protein. 21 9.1
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 30.3 bits (65), Expect = 0.020
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 222 PSHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 115
P+ DI + I+ K LFYT N I+ TVL +FL + V
Sbjct: 218 PTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLV 254
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.9 bits (59), Expect = 0.11
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Frame = -3
Query: 216 HVDIPYNILDTDKPLFYTNNII--------STVLYNFLPLTVHTKVRLNI 91
++DI +NI K LFYT NII TVL +LP KV L+I
Sbjct: 231 YLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSI 280
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.9 bits (59), Expect = 0.11
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Frame = -3
Query: 216 HVDIPYNILDTDKPLFYTNNII--------STVLYNFLPLTVHTKVRLNI 91
++DI +NI K LFYT NII TVL +LP KV L+I
Sbjct: 231 YLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSI 280
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 27.5 bits (58), Expect = 0.14
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Frame = -3
Query: 216 HVDIPYNILDTDKPLFYTNNII--------STVLYNFLPLTVHTKVRLNI 91
++DI +NI K LFYT N+I TVL +LP KV L+I
Sbjct: 227 YLDITFNITMRRKTLFYTVNLIIPCMGISFLTVLVFYLPSDSGEKVSLSI 276
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 25.4 bits (53), Expect = 0.56
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 234 PARAPSHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 115
P + DI +NI K LFYT N II V FL + V
Sbjct: 230 PCCTEPYSDITFNITMRRKTLFYTVNLIIPCVGITFLTVLV 270
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 24.2 bits (50), Expect = 1.3
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 210 DIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 115
DI +NI K LFYT N II V +FL + V
Sbjct: 225 DIVFNITLRRKTLFYTVNLIIPCVGISFLSVLV 257
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.3
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 210 DIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 115
DI Y I +P+FY N I+ +L N + L V
Sbjct: 202 DITYEIRLRRRPMFYVFNLILPCILINSVALLV 234
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.6 bits (46), Expect = 4.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 210 DIPYNILDTDKPLFYTNNII 151
DI +NI K LFYT N+I
Sbjct: 224 DIFFNITLRRKTLFYTVNLI 243
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 22.2 bits (45), Expect = 5.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 728 STQTPXWQPSRNSVVQRRRARSCSHSKSSFPSTAKQRKTKTRER 597
ST++ + RN +R+R S ++S S A KTK R +
Sbjct: 202 STKSYVLEGPRNG--KRKRKSSTIENESETESNASSTKTKMRRK 243
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 22.2 bits (45), Expect = 5.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -2
Query: 412 PEEGHGVEDITTRHIFSYKIVT 347
P EG + D RHI I+T
Sbjct: 364 PSEGEDISDYKFRHITEITILT 385
>DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR
protein.
Length = 381
Score = 21.8 bits (44), Expect = 6.9
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = -3
Query: 174 LFYTNNIISTVLYNFLPLTVHTKVRLNIL*NTR 76
L+Y + I+ +LYN + + + I TR
Sbjct: 316 LYYFSTTINPILYNLMSIKYRNAFKQTICCKTR 348
>DQ435334-1|ABD92649.1| 135|Apis mellifera OBP17 protein.
Length = 135
Score = 21.4 bits (43), Expect = 9.1
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = +3
Query: 558 SCHTASDIPGNLHTLPGLCLSLLG 629
S T ++ LHT+ +C+ +G
Sbjct: 15 SAMTLDELKSGLHTVQSVCMKEIG 38
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,574
Number of Sequences: 438
Number of extensions: 3655
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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