Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_B02
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    32   0.090
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    28   1.5  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    27   3.4  
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p...    26   4.5  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    26   5.9  
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||...    26   5.9  

>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 31.9 bits (69), Expect = 0.090
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 478 YVLTGTHQGMTETFGSTCHGAGRALSRAKSRRNIDYKEV 362
           YV+TGT++GMT  F      +GR  +  +S R +D K +
Sbjct: 664 YVVTGTYRGMTLLFRIDPSSSGRFSAYFESSRQLDIKNI 702


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -2

Query: 364  VLNKLETMGISIRVASPKLVMEEAPESYKNVTDVVDTCHAAGISKKTVKLRPIAVIKG*T 185
            VLN L+   I        L +E+  E    +TD+V+ CHA  + ++  K   I + +G  
Sbjct: 1933 VLNFLKVQKIDFEKLKETLTIEQLKEQ---LTDIVEACHAKTLEQQK-KTGRIELERGYA 1988

Query: 184  HFP-NVIINYHS 152
              P  + + +HS
Sbjct: 1989 TIPLKIDVPFHS 2000


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 569 SIPTKSSINTCGLSTNWSACTYWWYNGNLQLC 474
           SIP+KS+I T  L  N S C  +W +    LC
Sbjct: 391 SIPSKSTIRTKNL-FNVSDCKLYWQSNGDYLC 421


>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = -2

Query: 445 ETFGSTCHGAGRALSRAKSR--RNIDYKEVLNKLETMGISIRVAS-PKLVMEEAPESYKN 275
           +T  S+  GAG  L++A+ R  +    K +L   + +G      S PK++ + A + YK 
Sbjct: 89  DTTISSYDGAGAMLAKAQGRSVQVRGEKNLLTAYKEIGAMCDAISLPKVIADTAKQLYKR 148

Query: 274 VTD 266
           V D
Sbjct: 149 VDD 151


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 664  IYDVSHNIAKVEEHVVDGKLKTLLVHRKGSTRAFPPNHPLIPVDYQLTGQP 512
            I  +  N     +H+V  ++K LL  R GS+ +  P   L PV+   T  P
Sbjct: 998  IIPIKPNKPTKPDHLVAPRVKPLLPPRSGSSSSGVPAPNLTPVNVPPTPPP 1048


>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 265

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 258 STTSVTFLYDSGASSITS 311
           S T+  FLYDSGASS  S
Sbjct: 244 SRTNSRFLYDSGASSYAS 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,438
Number of Sequences: 5004
Number of extensions: 48906
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)