Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_B01
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc... 197 1e-51
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 89 5e-19
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c... 27 2.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 4.0
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 26 5.3
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 7.0
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 26 7.0
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 7.0
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 9.3
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 9.3
>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 297
Score = 197 bits (481), Expect = 1e-51
Identities = 106/240 (44%), Positives = 152/240 (63%), Gaps = 9/240 (3%)
Frame = -3
Query: 781 VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDV 602
V FV+ +T L+VANS+RRV +AE PT+AID V++ N++V+ DEFLAHR+G+IPL S ++
Sbjct: 17 VDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRLGMIPLDSSNI 76
Query: 601 VDK----IRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPVTSRH 434
+ + Y+R+C C +C +CSVE L+ KCT E T + DL VV S
Sbjct: 77 DEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDL------VVSSNSSL 130
Query: 433 RDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRH 254
AD ++ LI KLRK QE+ LR AKKG KEHAKW+PT+ V+FEYDP N ++H
Sbjct: 131 GHPILAD-PKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEYDPWNKLQH 189
Query: 253 TLY----PKPDEWPKSEHTELNEDQYEAD-FNWEAKPNKFFYNVESSGALKPENIVLMGI 89
T Y EWPKS++ + E E + FN++ +P +F+ +VES G++ P I++ G+
Sbjct: 190 TDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESVGSIPPNEIMVQGL 249
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 89.4 bits (212), Expect = 5e-19
Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 11/179 (6%)
Frame = -3
Query: 775 FVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISD-DVV 599
F + + S+AN+ RR+ IAE PT+A ++V + N++++ DE L+HRIGL+P+ +D D+
Sbjct: 60 FEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMF 119
Query: 598 DKIRYSRDCMCVDFCSECSVEFTLDVKC-------TDEQ--TRHVTTADLKSSDPRVVPV 446
++ +V F+L+ KC TDE+ R +++ S D P
Sbjct: 120 KWFQHPLPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQ 179
Query: 445 -TSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 272
R D +I++ KLR GQE+ L A+A G G++HAK++P A S+ P
Sbjct: 180 GRQEERFADNPIRVVNPDIVVAKLRPGQEIDLEAHAILGIGQDHAKFSPVATASYRLLP 238
>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 543 LHSEQKSTHMQSREYLILSTTSSDMSGMRPMRCAKNSSLKTVELASN 683
L S QKST ++ +L+ + + +G+ RC +S L + L N
Sbjct: 74 LSSNQKSTSKSNQMIKLLNNSLAHNNGLPSQRCNHDSKLVYMSLVQN 120
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.0
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Frame = +3
Query: 447 TGTTLGSLDFKSAVVTCLVCSSVHFTSNVNSTLHSEQ---KSTHMQSREYLILSTTSSDM 617
+ TT SL S + L SS+ +S +S+ S ST+ + S TSS +
Sbjct: 122 SSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSL 181
Query: 618 SGMRPMRCAKNSSLKTVELASNCTQSMAIVGVSA 719
S A +SSL + L S + + +S+
Sbjct: 182 SSTAASNSATSSSLASSSLNSTTSATATSSSLSS 215
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 26.2 bits (55), Expect = 5.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 470 RFQISSCYMSCLFICA 517
RF +S CY++CL C+
Sbjct: 181 RFPVSECYLACLKACS 196
>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 25.8 bits (54), Expect = 7.0
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -3
Query: 742 NSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISD-DVVDKIRYSRDCMC 566
NS+ V A+ P+M ID + L N + + + L P I++ D V D
Sbjct: 182 NSLVCVSFAQNPSMLIDSIDLVRNMPDFTKK--TDMLNLFPRIAEHDAVLSTSLHADPQF 239
Query: 565 VDFCSEC 545
+DF C
Sbjct: 240 LDFLESC 246
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 7.0
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +1
Query: 124 LLMILHYKR-ICLVSLPS*SPPHTDLH*VQCARFWAIHLVLD-ITYVSLYYQGHIQRTHQ 297
LLM + + + L S P SP + R I+++ D ITYV Y + +Q+T++
Sbjct: 348 LLMYIDSRADLLLKSNPQVSPTSERQVWAKIYRDSQINILQDSITYVKNYMEESLQKTYK 407
Query: 298 QLDSILHALSQN 333
L ++L L N
Sbjct: 408 PLPNLLQYLILN 419
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 256 HTLYPKPDEWPKSEHTELNEDQYEAD-FNWEAKPNKFFYNV 137
H +P PD W S T + + Y+ D N + + F Y++
Sbjct: 57 HDFFPSPDNWRMSFITVILDRWYDGDPSNNDIEKTPFEYDI 97
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 182 RLILIFIKFSVLAFGP-FIWFWI*RMSHYIIRVIFKGHTSSWIPF 313
R +L+ + ++ + P I+FWI ++ I IF H SW F
Sbjct: 1491 RTLLMLLFGTMTVWIPHLIYFWISTLAMCISPFIFNPHQFSWTDF 1535
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 284 KGHTSSWIPFCML 322
KGH SWI FC L
Sbjct: 1486 KGHAHSWIGFCRL 1498
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,172,412
Number of Sequences: 5004
Number of extensions: 67921
Number of successful extensions: 185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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