Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_B01
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0053 + 873918-874411,875255-875492,875682-875702 175 3e-44
03_02_0668 - 10290541-10290644,10290777-10290911,10291812-102919... 85 6e-17
02_05_0574 - 30086264-30086367,30087653-30087746,30088293-300885... 62 6e-10
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023... 30 2.4
02_04_0003 + 18832467-18832543,18832627-18832849,18832985-188333... 30 2.4
02_05_0447 + 29096853-29097033,29097812-29098146,29098651-290987... 29 5.5
08_02_0895 + 22351418-22351553,22352991-22353112,22353228-22353554 28 9.6
03_02_0226 - 6569657-6570388,6570461-6570748,6570846-6571303,657... 28 9.6
>09_01_0053 + 873918-874411,875255-875492,875682-875702
Length = 250
Score = 175 bits (426), Expect = 3e-44
Identities = 93/183 (50%), Positives = 125/183 (68%), Gaps = 13/183 (7%)
Frame = -3
Query: 778 KFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVV 599
KF + DT+ S+AN++RRV IAE PT+AID V++E NS+VL+DEF+AHR+GLIPL S +
Sbjct: 27 KFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSAAAM 86
Query: 598 DKIRYSRDCMCVD---FCSECSVEFTLDVKCTD-EQTRHVTTADLKSSDPRVVPVTSRHR 431
+R+SRDC D C CSVEF L + TD +QT VT+ DL+S+DP+V PV
Sbjct: 87 -AMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVTSNDLRSTDPKVCPVDQARA 145
Query: 430 DE---------DQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEY 278
+ D A + ILI+KLR+GQEL+LRA A+KG GK+HAKW+P A V+F Y
Sbjct: 146 YQHALGGTEPFDTAAAADQRGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 205
Query: 277 DPD 269
+P+
Sbjct: 206 EPE 208
>03_02_0668 -
10290541-10290644,10290777-10290911,10291812-10291905,
10291994-10292089,10292458-10292639,10293578-10293658,
10293746-10293875,10293996-10294181,10294567-10294692
Length = 377
Score = 85.0 bits (201), Expect = 6e-17
Identities = 59/197 (29%), Positives = 98/197 (49%), Gaps = 19/197 (9%)
Frame = -3
Query: 781 VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDV 602
++F + + S+AN+ RR+ IAE PTMAI+ V + N++V++DE L+HR+GLIPL +D
Sbjct: 82 MEFDMIGIDASMANAFRRILIAEVPTMAIEKVLMADNTSVIADEVLSHRLGLIPLDADPR 141
Query: 601 VDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTR-HVTTADLK-----SSDPRVVPVTS 440
+ + D ++ + L V C R V + DL+ S P P S
Sbjct: 142 LFEYISENDVP----TERNTIVYKLHVSCKKGSPRLTVKSGDLEWLPEGSQLPLASPAQS 197
Query: 439 RHRDEDQADYGEAD-------------EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPT 299
+ + + ++ +I I +L GQ ++L +A KG GK HAKW+P
Sbjct: 198 GDKQKTYTSFSQSQKDILEKPLGVKFKDITIARLGPGQAIELEVHAVKGIGKVHAKWSPV 257
Query: 298 AGVSFEYDPDNIMRHTL 248
A + P+ ++R +
Sbjct: 258 ATAWYRMLPEVVLREEI 274
>02_05_0574 -
30086264-30086367,30087653-30087746,30088293-30088555,
30089122-30089202,30089293-30089422,30089545-30089730,
30090013-30090138
Length = 327
Score = 61.7 bits (143), Expect = 6e-10
Identities = 28/58 (48%), Positives = 44/58 (75%)
Frame = -3
Query: 781 VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISD 608
++F + + S+AN+ RR+ IAE PTMAI+ V + N++V++DE L+HR+GLIPL +D
Sbjct: 82 MEFDMIGIDASIANAFRRILIAELPTMAIEKVLMVDNTSVIADEVLSHRLGLIPLDAD 139
>02_05_0938 +
32901143-32901215,32901841-32901982,32902243-32902314,
32902573-32902644,32902711-32902782,32902913-32902948,
32903001-32903072,32903319-32903387,32903483-32903554,
32903668-32903739,32903838-32903909,32904153-32904224,
32904470-32904541,32904623-32904694,32904782-32904853,
32904911-32905003,32905150-32905218,32905315-32905386,
32905479-32905552,32905643-32905771,32905966-32906331,
32906584-32906954,32907522-32907890
Length = 884
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +3
Query: 507 SSVHFTSNVNSTLHSEQKSTHMQSREYLILSTTSSDMSGMRPMRCAKNSSLKTVELASN 683
S++H+ + N+ L + L+ +S+ +SG P+ AK +L T++L+ N
Sbjct: 270 STLHYLNLANNNLEGPIPDNISSCMNLISLNLSSNYLSGAIPIELAKMKNLDTLDLSCN 328
>02_04_0003 +
18832467-18832543,18832627-18832849,18832985-18833375,
18833766-18834223,18834320-18834607,18834679-18835398
Length = 718
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -3
Query: 250 LYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALK 116
+Y K ++ + H LNE Q EA+F K YN+ESS L+
Sbjct: 267 IYSKRSKFKEEFHRVLNEPQTEAEFEKAWKDLMEQYNLESSVYLR 311
>02_05_0447 +
29096853-29097033,29097812-29098146,29098651-29098782,
29098870-29099142,29099295-29099477
Length = 367
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 299 SWIPFCMLFPKTFFCICPK 355
SW+ LFP F C CPK
Sbjct: 229 SWLRLAALFPLHFVCACPK 247
>08_02_0895 + 22351418-22351553,22352991-22353112,22353228-22353554
Length = 194
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 166 LPS*SPPHTDLH*VQCARFWAIHLVLDITYVSLYYQGHIQRT 291
LPS S H LH + CA W + +T L+ GHI T
Sbjct: 60 LPSGSVSH--LHRIPCAETWHFYKGEPLTVFELHDDGHIDLT 99
>03_02_0226 -
6569657-6570388,6570461-6570748,6570846-6571303,
6571694-6571828,6571829-6572084,6572229-6572451,
6572533-6572661,6573570-6573775
Length = 808
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 250 LYPKPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALK 116
+Y K + + H LNE Q EA+F+ YN+ESS L+
Sbjct: 353 IYSKRSSFKQEFHRVLNEPQTEAEFDKAWSDLMEQYNLESSVYLR 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,825,387
Number of Sequences: 37544
Number of extensions: 415460
Number of successful extensions: 1053
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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