Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_B01
(783 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR542041-1|CAG46838.1| 275|Homo sapiens POLR2C protein. 386 e-107
BC028157-1|AAH28157.1| 275|Homo sapiens polymerase (RNA) II (DN... 386 e-107
BC003159-1|AAH03159.1| 275|Homo sapiens polymerase (RNA) II (DN... 386 e-107
BC000409-1|AAH00409.1| 275|Homo sapiens polymerase (RNA) II (DN... 386 e-107
AF008443-1|AAC14355.1| 275|Homo sapiens RNA polymerase II subun... 386 e-107
AC004382-7|AAC24309.1| 275|Homo sapiens RNA polymerase II subun... 386 e-107
J05448-1|AAA36586.1| 275|Homo sapiens protein ( Human RNA polym... 382 e-105
AJ224144-1|CAA11843.1| 275|Homo sapiens RNA polymerase subunit ... 382 e-105
AJ224143-1|CAA11842.1| 275|Homo sapiens RNA polymerase II subun... 382 e-105
BC008863-1|AAH08863.1| 346|Homo sapiens polymerase (RNA) I poly... 94 4e-19
BC008118-1|AAH08118.1| 338|Homo sapiens POLR1C protein protein. 94 4e-19
AL355802-12|CAI42629.1| 346|Homo sapiens RP3-337H4.4 protein. 94 4e-19
AL355802-11|CAI42628.1| 314|Homo sapiens RP3-337H4.4 protein. 94 4e-19
AF008442-1|AAC14354.1| 346|Homo sapiens RNA polymerase I subuni... 94 4e-19
AL355802-13|CAI42630.1| 139|Homo sapiens RP3-337H4.4 protein. 59 2e-08
AL355802-16|CAI42632.1| 200|Homo sapiens RP3-337H4.4 protein. 50 1e-05
AL355802-15|CAI42633.1| 168|Homo sapiens RP3-337H4.4 protein. 33 1.2
>CR542041-1|CAG46838.1| 275|Homo sapiens POLR2C protein.
Length = 275
Score = 386 bits (949), Expect = e-107
Identities = 170/257 (66%), Positives = 214/257 (83%)
Frame = -3
Query: 781 VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDV 602
VKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL DEF+AHR+GLIPLISDD+
Sbjct: 19 VKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDI 78
Query: 601 VDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPVTSRHRDED 422
VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL S+ PRV+PVTSR+RD D
Sbjct: 79 VDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDND 138
Query: 421 QADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYP 242
DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGV+FEYDPDN +RHT+YP
Sbjct: 139 PNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYP 198
Query: 241 KPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGIXXXXXXXXX 62
KP+EWPKSE++EL+ED+ +A ++ KP +F+YNVES G+L+PE IVL +
Sbjct: 199 KPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSD 258
Query: 61 XXXXLAQEAQNDALAIN 11
L+ E Q+D L IN
Sbjct: 259 LQTQLSHEIQSDVLTIN 275
>BC028157-1|AAH28157.1| 275|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide C, 33kDa protein.
Length = 275
Score = 386 bits (949), Expect = e-107
Identities = 170/257 (66%), Positives = 214/257 (83%)
Frame = -3
Query: 781 VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDV 602
VKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL DEF+AHR+GLIPLISDD+
Sbjct: 19 VKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDI 78
Query: 601 VDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPVTSRHRDED 422
VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL S+ PRV+PVTSR+RD D
Sbjct: 79 VDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDND 138
Query: 421 QADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYP 242
DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGV+FEYDPDN +RHT+YP
Sbjct: 139 PNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYP 198
Query: 241 KPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGIXXXXXXXXX 62
KP+EWPKSE++EL+ED+ +A ++ KP +F+YNVES G+L+PE IVL +
Sbjct: 199 KPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSD 258
Query: 61 XXXXLAQEAQNDALAIN 11
L+ E Q+D L IN
Sbjct: 259 LQTQLSHEIQSDVLTIN 275
>BC003159-1|AAH03159.1| 275|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide C, 33kDa protein.
Length = 275
Score = 386 bits (949), Expect = e-107
Identities = 170/257 (66%), Positives = 214/257 (83%)
Frame = -3
Query: 781 VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDV 602
VKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL DEF+AHR+GLIPLISDD+
Sbjct: 19 VKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDI 78
Query: 601 VDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPVTSRHRDED 422
VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL S+ PRV+PVTSR+RD D
Sbjct: 79 VDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDND 138
Query: 421 QADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYP 242
DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGV+FEYDPDN +RHT+YP
Sbjct: 139 PNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYP 198
Query: 241 KPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGIXXXXXXXXX 62
KP+EWPKSE++EL+ED+ +A ++ KP +F+YNVES G+L+PE IVL +
Sbjct: 199 KPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSD 258
Query: 61 XXXXLAQEAQNDALAIN 11
L+ E Q+D L IN
Sbjct: 259 LQTQLSHEIQSDVLTIN 275
>BC000409-1|AAH00409.1| 275|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide C, 33kDa protein.
Length = 275
Score = 386 bits (949), Expect = e-107
Identities = 170/257 (66%), Positives = 214/257 (83%)
Frame = -3
Query: 781 VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDV 602
VKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL DEF+AHR+GLIPLISDD+
Sbjct: 19 VKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDI 78
Query: 601 VDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPVTSRHRDED 422
VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL S+ PRV+PVTSR+RD D
Sbjct: 79 VDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDND 138
Query: 421 QADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYP 242
DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGV+FEYDPDN +RHT+YP
Sbjct: 139 PNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYP 198
Query: 241 KPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGIXXXXXXXXX 62
KP+EWPKSE++EL+ED+ +A ++ KP +F+YNVES G+L+PE IVL +
Sbjct: 199 KPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSD 258
Query: 61 XXXXLAQEAQNDALAIN 11
L+ E Q+D L IN
Sbjct: 259 LQTQLSHEIQSDVLTIN 275
>AF008443-1|AAC14355.1| 275|Homo sapiens RNA polymerase II subunit
hRPB33 protein.
Length = 275
Score = 386 bits (949), Expect = e-107
Identities = 170/257 (66%), Positives = 214/257 (83%)
Frame = -3
Query: 781 VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDV 602
VKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL DEF+AHR+GLIPLISDD+
Sbjct: 19 VKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDI 78
Query: 601 VDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPVTSRHRDED 422
VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL S+ PRV+PVTSR+RD D
Sbjct: 79 VDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDND 138
Query: 421 QADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYP 242
DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGV+FEYDPDN +RHT+YP
Sbjct: 139 PNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYP 198
Query: 241 KPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGIXXXXXXXXX 62
KP+EWPKSE++EL+ED+ +A ++ KP +F+YNVES G+L+PE IVL +
Sbjct: 199 KPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSD 258
Query: 61 XXXXLAQEAQNDALAIN 11
L+ E Q+D L IN
Sbjct: 259 LQTQLSHEIQSDVLTIN 275
>AC004382-7|AAC24309.1| 275|Homo sapiens RNA polymerase II subunit
hRPB33 protein.
Length = 275
Score = 386 bits (949), Expect = e-107
Identities = 170/257 (66%), Positives = 214/257 (83%)
Frame = -3
Query: 781 VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDV 602
VKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL DEF+AHR+GLIPLISDD+
Sbjct: 19 VKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDI 78
Query: 601 VDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPVTSRHRDED 422
VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL S+ PRV+PVTSR+RD D
Sbjct: 79 VDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDND 138
Query: 421 QADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYP 242
DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGV+FEYDPDN +RHT+YP
Sbjct: 139 PNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYP 198
Query: 241 KPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGIXXXXXXXXX 62
KP+EWPKSE++EL+ED+ +A ++ KP +F+YNVES G+L+PE IVL +
Sbjct: 199 KPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSD 258
Query: 61 XXXXLAQEAQNDALAIN 11
L+ E Q+D L IN
Sbjct: 259 LQTQLSHEIQSDVLTIN 275
>J05448-1|AAA36586.1| 275|Homo sapiens protein ( Human RNA
polymerase subunit hRPB 33, mRNA. ).
Length = 275
Score = 382 bits (939), Expect = e-105
Identities = 169/257 (65%), Positives = 213/257 (82%)
Frame = -3
Query: 781 VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDV 602
VKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL DEF+AHR+GLIPLISDD+
Sbjct: 19 VKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDI 78
Query: 601 VDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPVTSRHRDED 422
VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL S+ PRV+PVTSR+RD D
Sbjct: 79 VDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDND 138
Query: 421 QADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYP 242
DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGV+FEYDPDN +R T+YP
Sbjct: 139 PNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRTTVYP 198
Query: 241 KPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGIXXXXXXXXX 62
KP+EWPKSE++EL+ED+ +A ++ KP +F+YNVES G+L+PE IVL +
Sbjct: 199 KPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSD 258
Query: 61 XXXXLAQEAQNDALAIN 11
L+ E Q+D L IN
Sbjct: 259 LQTQLSHEIQSDVLTIN 275
>AJ224144-1|CAA11843.1| 275|Homo sapiens RNA polymerase subunit
protein.
Length = 275
Score = 382 bits (939), Expect = e-105
Identities = 169/257 (65%), Positives = 213/257 (82%)
Frame = -3
Query: 781 VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDV 602
VKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL DEF+AHR+GLIPLISDD+
Sbjct: 19 VKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDI 78
Query: 601 VDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPVTSRHRDED 422
VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL S+ PRV+PVTSR+RD D
Sbjct: 79 VDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDND 138
Query: 421 QADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYP 242
DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGV+FEYDPDN +R T+YP
Sbjct: 139 PNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRTTVYP 198
Query: 241 KPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGIXXXXXXXXX 62
KP+EWPKSE++EL+ED+ +A ++ KP +F+YNVES G+L+PE IVL +
Sbjct: 199 KPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSD 258
Query: 61 XXXXLAQEAQNDALAIN 11
L+ E Q+D L IN
Sbjct: 259 LQTQLSHEIQSDVLTIN 275
>AJ224143-1|CAA11842.1| 275|Homo sapiens RNA polymerase II subunit
protein.
Length = 275
Score = 382 bits (939), Expect = e-105
Identities = 169/257 (65%), Positives = 213/257 (82%)
Frame = -3
Query: 781 VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDV 602
VKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL DEF+AHR+GLIPLISDD+
Sbjct: 19 VKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDI 78
Query: 601 VDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPVTSRHRDED 422
VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL S+ PRV+PVTSR+RD D
Sbjct: 79 VDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDND 138
Query: 421 QADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYP 242
DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGV+FEYDPDN +R T+YP
Sbjct: 139 PNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRTTVYP 198
Query: 241 KPDEWPKSEHTELNEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGIXXXXXXXXX 62
KP+EWPKSE++EL+ED+ +A ++ KP +F+YNVES G+L+PE IVL +
Sbjct: 199 KPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSD 258
Query: 61 XXXXLAQEAQNDALAIN 11
L+ E Q+D L IN
Sbjct: 259 LQTQLSHEIQSDVLTIN 275
>BC008863-1|AAH08863.1| 346|Homo sapiens polymerase (RNA) I
polypeptide C, 30kDa protein.
Length = 346
Score = 94.3 bits (224), Expect = 4e-19
Identities = 66/186 (35%), Positives = 105/186 (56%), Gaps = 15/186 (8%)
Frame = -3
Query: 781 VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDV 602
++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+GLIP+ +D
Sbjct: 61 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 120
Query: 601 VDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVV----PVTSRH 434
+ + R D + +++F L V+CT + H A SSDP + V +RH
Sbjct: 121 LFEYRNQGD---EEGTEIDTLQFRLQVRCT--RNPH---AAKDSSDPNELYVNHKVYTRH 172
Query: 433 RD----EDQAD-YGEA------DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVS 287
+QAD + E D+ILI +LR GQE+ L + KG GK+HAK++P A S
Sbjct: 173 MTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATAS 232
Query: 286 FEYDPD 269
+ PD
Sbjct: 233 YRLLPD 238
>BC008118-1|AAH08118.1| 338|Homo sapiens POLR1C protein protein.
Length = 338
Score = 94.3 bits (224), Expect = 4e-19
Identities = 66/186 (35%), Positives = 105/186 (56%), Gaps = 15/186 (8%)
Frame = -3
Query: 781 VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDV 602
++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+GLIP+ +D
Sbjct: 53 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 112
Query: 601 VDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVV----PVTSRH 434
+ + R D + +++F L V+CT + H A SSDP + V +RH
Sbjct: 113 LFEYRNQGD---EEGTEIDTLQFRLQVRCT--RNPH---AAKDSSDPNELYVNHKVYTRH 164
Query: 433 RD----EDQAD-YGEA------DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVS 287
+QAD + E D+ILI +LR GQE+ L + KG GK+HAK++P A S
Sbjct: 165 MTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATAS 224
Query: 286 FEYDPD 269
+ PD
Sbjct: 225 YRLLPD 230
>AL355802-12|CAI42629.1| 346|Homo sapiens RP3-337H4.4 protein.
Length = 346
Score = 94.3 bits (224), Expect = 4e-19
Identities = 66/186 (35%), Positives = 105/186 (56%), Gaps = 15/186 (8%)
Frame = -3
Query: 781 VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDV 602
++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+GLIP+ +D
Sbjct: 61 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 120
Query: 601 VDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVV----PVTSRH 434
+ + R D + +++F L V+CT + H A SSDP + V +RH
Sbjct: 121 LFEYRNQGD---EEGTEIDTLQFRLQVRCT--RNPH---AAKDSSDPNELYVNHKVYTRH 172
Query: 433 RD----EDQAD-YGEA------DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVS 287
+QAD + E D+ILI +LR GQE+ L + KG GK+HAK++P A S
Sbjct: 173 MTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATAS 232
Query: 286 FEYDPD 269
+ PD
Sbjct: 233 YRLLPD 238
>AL355802-11|CAI42628.1| 314|Homo sapiens RP3-337H4.4 protein.
Length = 314
Score = 94.3 bits (224), Expect = 4e-19
Identities = 66/186 (35%), Positives = 105/186 (56%), Gaps = 15/186 (8%)
Frame = -3
Query: 781 VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDV 602
++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+GLIP+ +D
Sbjct: 61 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 120
Query: 601 VDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVV----PVTSRH 434
+ + R D + +++F L V+CT + H A SSDP + V +RH
Sbjct: 121 LFEYRNQGD---EEGTEIDTLQFRLQVRCT--RNPH---AAKDSSDPNELYVNHKVYTRH 172
Query: 433 RD----EDQAD-YGEA------DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVS 287
+QAD + E D+ILI +LR GQE+ L + KG GK+HAK++P A S
Sbjct: 173 MTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATAS 232
Query: 286 FEYDPD 269
+ PD
Sbjct: 233 YRLLPD 238
>AF008442-1|AAC14354.1| 346|Homo sapiens RNA polymerase I subunit
hRPA39 protein.
Length = 346
Score = 94.3 bits (224), Expect = 4e-19
Identities = 66/186 (35%), Positives = 105/186 (56%), Gaps = 15/186 (8%)
Frame = -3
Query: 781 VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDV 602
++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+GLIP+ +D
Sbjct: 61 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 120
Query: 601 VDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVV----PVTSRH 434
+ + R D + +++F L V+CT + H A SSDP + V +RH
Sbjct: 121 LFEYRNQGD---EEGTEIDTLQFRLQVRCT--RNPH---AAKDSSDPNELYVNHKVYTRH 172
Query: 433 RD----EDQAD-YGEA------DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVS 287
+QAD + E D+ILI +LR GQE+ L + KG GK+HAK++P A S
Sbjct: 173 MTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATAS 232
Query: 286 FEYDPD 269
+ PD
Sbjct: 233 YRLLPD 238
>AL355802-13|CAI42630.1| 139|Homo sapiens RP3-337H4.4 protein.
Length = 139
Score = 59.3 bits (137), Expect = 2e-08
Identities = 24/58 (41%), Positives = 43/58 (74%)
Frame = -3
Query: 781 VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISD 608
++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+GLIP+ +D
Sbjct: 60 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHAD 117
>AL355802-16|CAI42632.1| 200|Homo sapiens RP3-337H4.4 protein.
Length = 200
Score = 49.6 bits (113), Expect = 1e-05
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = -3
Query: 400 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 269
D+ILI +LR GQE+ L + KG GK+HAK++P A S+ PD
Sbjct: 67 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPD 110
>AL355802-15|CAI42633.1| 168|Homo sapiens RP3-337H4.4 protein.
Length = 168
Score = 33.1 bits (72), Expect = 1.2
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -3
Query: 400 DEILIIKLRKGQELKLRAYAKKGFGKEHAK 311
D+ILI +LR GQE+ L + KG GK+ A+
Sbjct: 67 DDILIAQLRPGQEIDLLMHCVKGIGKKVAR 96
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,319,646
Number of Sequences: 237096
Number of extensions: 2283065
Number of successful extensions: 12374
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12367
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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