Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_A24
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    26   7.2  
SPAC8C9.05 |||D-Tyr-tRNA deacylase |Schizosaccharomyces pombe|ch...    25   9.6  
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    25   9.6  

>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 226 PASSSSVRGGPLYFLTSSVASHXAHLLLSSPKYPLKAFTPHG 351
           P  SSSV+   L F+TSS+++     +   P+ P   + PHG
Sbjct: 333 PTISSSVQVNSLAFITSSLSA-----ITKEPEAPETEYNPHG 369


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 695 RYAAXHGVIVVGPDTSPRGVKIDGDDSSWDFGVS 594
           RY    G IV+   ++PR +K +GD   +DF +S
Sbjct: 219 RYCLQRGFIVLPKSSTPRRIKENGD--VFDFEIS 250


>SPAC8C9.05 |||D-Tyr-tRNA deacylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 149

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 341 VKAFSGYLGEDKSKWAXWDATELVKKYNGPPLTLLLD 231
           VK     LG DK K   + A   V+  N  P+T+L D
Sbjct: 110 VKTLGESLGSDKIKKGVFGAMMNVQLVNNGPVTILYD 146


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 671 IVVGPDTSPRGVKIDGDDSSWDFGVSA 591
           +++    S R + I G+D+ W  G+SA
Sbjct: 115 VILATGASARRLHITGEDTYWQAGISA 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,306,663
Number of Sequences: 5004
Number of extensions: 68153
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)