Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_A23
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    27   0.74 
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    26   2.3  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    24   6.9  

>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 27.5 bits (58), Expect = 0.74
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 240 FHVYIHDYSFKCNVFQRSXFFYLKKH 317
           F ++ H YS++CN      +FYL KH
Sbjct: 236 FSLFAHHYSYRCNT-----WFYLSKH 256


>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 79  NEVCDXSKNYGKWNGIPTQSSTILY 153
           N   D   NYG+++G PT   T  Y
Sbjct: 355 NGAADELANYGEYSGAPTDGQTYEY 379


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -2

Query: 117  PFAVILRXITHFIINLKIYCDM 52
            P  VI+  ++ F++N++IY ++
Sbjct: 1477 PLRVIISNVSGFVVNVEIYAEV 1498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,416,156
Number of Sequences: 5004
Number of extensions: 26063
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)