Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_A23
         (379 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   2.8  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   4.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   4.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.4  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    20   8.4  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 297 FFYLKKHKTNSSINSKLLTKNRPAE 371
           +FY K + +NSS +  L  +N+  E
Sbjct: 142 YFYSKSNGSNSSNSDVLFKQNKEEE 166


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 297 FFYLKKHKTNS 329
           F YL KH TNS
Sbjct: 204 FLYLNKHFTNS 214


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 297 FFYLKKHKTNS 329
           F YL KH TNS
Sbjct: 204 FLYLNKHFTNS 214


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +2

Query: 125 YLHRAQQSCMVIKAHADLLIPLCICPQH 208
           Y+ R  Q C + K     + P C+ P++
Sbjct: 234 YMRRKCQECRLKKCLTVGMRPECVVPEY 261


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 174 SACALITIQDC 142
           S CAL T+ DC
Sbjct: 164 SKCALTTLTDC 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,319
Number of Sequences: 438
Number of extensions: 1774
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)