Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_A16
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...   207   1e-54
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...   142   6e-35
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    82   1e-16
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo...    62   1e-10
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M...    29   1.1  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    27   2.5  
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    26   5.8  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   7.7  
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   7.7  

>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score =  207 bits (506), Expect = 1e-54
 Identities = 94/106 (88%), Positives = 100/106 (94%)
 Frame = -3

Query: 840 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNA 661
           IRPLWRHYFQNTQG+IFVVDSNDRERI EA EEL RML+EDELRDA+LL+FANKQDLPNA
Sbjct: 74  IRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNA 133

Query: 660 MNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 523
           MNAAEITDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLS  LKN
Sbjct: 134 MNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score =  142 bits (344), Expect = 6e-35
 Identities = 65/105 (61%), Positives = 80/105 (76%)
 Frame = -3

Query: 840 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNA 661
           IRPLWRHYF  T+GLIFVVDS D  RI EAR+EL R++S+ E+RD +LL+ ANKQDLP A
Sbjct: 78  IRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGA 137

Query: 660 MNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 526
           ++ A+ITD L L  L++R W +Q TCA +GDGL EGL WLS   K
Sbjct: 138 LSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 36/105 (34%), Positives = 65/105 (61%)
 Frame = -3

Query: 840 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNA 661
           +R  W++YF++T+ +I+VVDS D  R+ E R  L  +L E++L    +L+ ANK D+  A
Sbjct: 73  LRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGA 132

Query: 660 MNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 526
           +++ EI+  L +   ++ +W I +  A +G  + + + WL+N LK
Sbjct: 133 LSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLK 177


>SPBC31F10.06c |sar1||ADP-ribosylation factor
           Sar1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 190

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 29/72 (40%), Positives = 43/72 (59%)
 Frame = -3

Query: 837 RPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAM 658
           R LWR YF    G++++VD  D ER+ E++ EL  +L+ +EL     LI  NK D P A+
Sbjct: 78  RRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAI 137

Query: 657 NAAEITDKLGLH 622
           +  E+   LGL+
Sbjct: 138 SEDELKAALGLY 149


>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
 Frame = -3

Query: 783 DSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQ------DLPNAMNAAEITDKLGL- 625
           D ND   +   +    R+  +++L + VL  +  KQ      +L +A N  E+ +   L 
Sbjct: 46  DENDSHSMATIKSHFERLKRDEQLLNGVLKKYDAKQEVLSPEELRDAQNFLEMQEANSLD 105

Query: 624 HSLRNRNWYIQATCATSGDGLYEG--LDWLSNQLKN-ANR*PYVRQLADKS 481
           +S+R  N  ++   AT  D  Y+   L  ++N++   A   P++ Q+  K+
Sbjct: 106 NSIRGTNELLERAYATREDFDYQNSVLGNVTNRINGAAMSIPFINQILRKT 156


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 318 LKYCFSKYYINYVYLNAINGMQINSVQ 238
           L YC   Y+INY+  ++IN   ++ +Q
Sbjct: 33  LSYCCVSYFINYLDRSSINNAYLSGMQ 59


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 837 RPLWRHYFQNTQGLIFVVDSNDRER--IGEAREELMRMLSEDELRDAVL 697
           R  W + F+N   +IF V  ND ++     A  E  R++    L D+++
Sbjct: 206 RRKWIYCFENVNSIIFCVSLNDYDKKLYERAAPERNRLVESISLFDSII 254


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = -3

Query: 774 DRERIGEAREELMRMLSEDELRDAVL----LIFANKQDLPNAMNAAEITDKLGLHSLRNR 607
           D E+  + REE +R+L E   +DA +       +  +DL + ++ A+++ K   +S    
Sbjct: 405 DEEKKKKEREEQVRLLQESADKDAEMNEASTATSENEDLKDDLSLADLSSKKTANSQATE 464

Query: 606 N 604
           N
Sbjct: 465 N 465


>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 127

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 554 PSYSPSPEVAHVAWMYQLRLRSECRPSL-SVISAAFIAFGRSCLFA 688
           P+ SP PEV+H  W+  L       P L S  +   IAF   CL A
Sbjct: 16  PNSSPDPEVSHKLWVSSLNKFQYTLPLLISNFAGLGIAF-IYCLIA 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,376,170
Number of Sequences: 5004
Number of extensions: 69088
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)