Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_A10
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 63 5e-11
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 29 0.80
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 27 2.5
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 3.2
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 3.2
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 27 4.3
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 27 4.3
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 26 5.7
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 9.9
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 25 9.9
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 62.9 bits (146), Expect = 5e-11
Identities = 58/250 (23%), Positives = 105/250 (42%), Gaps = 11/250 (4%)
Frame = -3
Query: 812 PYXTRKRFYRGTAVIQNDNKWEVTLDHRRLKTPNGNVLTVGNEP--LARAVAVEWDSQNE 639
P + +RF++ TA + + + LD R LK+P+G ++ V E LA +A+EWD
Sbjct: 34 PQPSFRRFWKNTATKIQNGEVLIQLDGRNLKSPSGKIVKVPKEMELLAHLIALEWDRLPS 93
Query: 638 T-ISQATMHLTALCNTALD-NPGKLTSHDIVN-YLLEYYPTDTLLFYSXXXXXXXXXXXR 468
T + Q + +T+L + A+D + K ++++ L+ + TDT+L YS
Sbjct: 94 TSVRQHNLPITSLVSRAIDISQFKKEEKELLSTQLIRFLDTDTILIYSPETEYEGKLLEE 153
Query: 467 K---WTPILDWFQKTFNVKQELAN---SIQPPPVFTETRAVLARHFLSYDFAALTAINFG 306
+ W P+ + F+ V+ + I ET + S + L A
Sbjct: 154 QKENWWPLKETFENKLGVQLSYLDGDAGIIAHKQTQETHERIRNWLSSLNSWQLAAFERS 213
Query: 305 VEALKSPILMLACMERRXXXXXXXXXXXXXXEYQLERWGRVPWAHGLSQADLTARVSAAL 126
V KS I+ ++ +YQ RWG + DL +++++
Sbjct: 214 VSCCKSFIVSFMILKGYLNSEKAAALTNLELQYQTNRWGSLE----DDNEDLKNKLASSA 269
Query: 125 LLVHCATEKH 96
+L C + H
Sbjct: 270 ILSRCIEDMH 279
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 29.1 bits (62), Expect = 0.80
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 257 GAPYTPTLRSVTLMPRHRNLLLSVLRNHMIEN 352
GAPY TL+ T + + L ++ NH++ N
Sbjct: 164 GAPYGSTLKDFTFVEYNMRLRRKIIENHLLPN 195
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 27.5 bits (58), Expect = 2.5
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -3
Query: 719 TPNGNVLTVGNEPLARAVAVEWDSQNETISQATMHLTALCNTALDNPGKLTS 564
T + VL + L R +WD Q ETIS A L +C A G++ S
Sbjct: 687 TESRKVLNIPLNDLRRMFHQQWDKQRETISVAENDL-RICQKARKFFGEIES 737
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 707 NVLTVGNEPLARAVAVEWDSQNETI 633
NVL V NEP A A+A D +N+ I
Sbjct: 212 NVLRVVNEPTAAALAYGLDKKNDAI 236
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 3.2
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -3
Query: 800 RKRFYRGTAVIQNDNKWEVTLDHRRLKTPNGNVLTVGNEPLARAVAVEWDSQNETIS 630
R+ FY A IQ+D+ + KT + NE L A E DSQ+ET+S
Sbjct: 113 RRMFYSFCA-IQDDSNISIYAIGTSSKTDSSIQAASPNEDLKSEGAQEIDSQSETVS 168
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 689 NEPLARAVAVEWDSQNETISQATMHL-TALCNTALDN 582
N+PLA AVA + N I +AT+HL A+ N L++
Sbjct: 350 NDPLAFAVAGKVSLANGQIDEATVHLIRAVSNGHLES 386
>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 161 QADLTARVSAALLLVHCATEKHAIKTKSAQDSQ*GQYNDTRFPYVV 24
+A ++ V A + +T+ H I D+Q Y +FPYVV
Sbjct: 133 RAYVSYSVPIATTKIDSSTKYHEISIDDLTDAQRKLYKSKKFPYVV 178
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 650 SQNETISQATMHLTALCNTALDNPGKLTSHDIV 552
S+N+T + +++ + L N A+D P T D+V
Sbjct: 612 SRNQTPTHSSIAVDTLSNVAVDQPAISTPSDVV 644
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 254 RGAPYTPTLRSVTLMPRHRNLLLSVLRNHMIEN 352
RG PYTP++R +L+ LLS NH + +
Sbjct: 112 RGGPYTPSIRDDSLL-----ALLSFSSNHRLHS 139
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 122 GAGRRTRAPSGRPGSARAPTARGPSAPA 205
G + PSG +A AP A G +APA
Sbjct: 58 GNEKLATVPSGGAAAAAAPAAAGGAAPA 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,374,744
Number of Sequences: 5004
Number of extensions: 68772
Number of successful extensions: 198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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