Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_A05
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 260 2e-70
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 126 3e-30
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 37 0.003
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 26 6.8
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 9.0
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 25 9.0
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 25 9.0
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 260 bits (637), Expect = 2e-70
Identities = 121/185 (65%), Positives = 151/185 (81%), Gaps = 4/185 (2%)
Frame = -2
Query: 768 CVRLSRFXNDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAKSQ 589
CVRL+RF NDRTISFIPPDGEF+LMSYR++++V+PLIW+E H+ SR+E+M+KAK+Q
Sbjct: 241 CVRLARFENDRTISFIPPDGEFDLMSYRMSSNVRPLIWVECESIVHSGSRIEFMVKAKAQ 300
Query: 588 FKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFPGGKEYLMRAHF 409
FK+R ANNV+IIIPVP DADSP+F+T+ G V+Y PEQ A+ W+IK F GGKE+ MRA
Sbjct: 301 FKKRCIANNVQIIIPVPEDADSPRFQTSNGHVQYAPEQAAMVWNIKKFAGGKEFFMRAEM 360
Query: 408 GLPSVECE--EVDGKPPIQVKFEIPYFTTSGIQVRYLKIIE-KSGYQALPWVRYITQNG- 241
GLPSV+ E +V K P+Q+KF IPYFTTSGIQVRYLKI E K Y A+PWVRY+TQNG
Sbjct: 361 GLPSVKNEDIQVQKKRPVQLKFAIPYFTTSGIQVRYLKITEPKLNYHAMPWVRYVTQNGT 420
Query: 240 DYQLR 226
+Y +R
Sbjct: 421 EYSIR 425
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 126 bits (305), Expect = 3e-30
Identities = 63/183 (34%), Positives = 102/183 (55%), Gaps = 2/183 (1%)
Frame = -2
Query: 768 CVRLSRFXNDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAKSQ 589
CVRL F N+ I+FIPPDGE ELMSYR + ++ I ++E+ + ++ Y I ++
Sbjct: 264 CVRLPEFENEHRITFIPPDGEVELMSYRSHENINIPFRIVPIVEQLSKQKIIYRISIRAD 323
Query: 588 FKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFPGGKEYLMRAHF 409
+ + ++++ IPVP + + G Y P +N I W I F G E + A
Sbjct: 324 YPHK-LSSSLNFRIPVPTNVVKANPRVNRGKAGYEPSENIINWKIPRFLGETELIFYAEV 382
Query: 408 GLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSG--YQALPWVRYITQNGDY 235
L + +++ KPPI + F I FT+SG+ V+YL++ E S Y+++ WVRY T+ G
Sbjct: 383 ELSNTTNQQIWAKPPISLDFNILMFTSSGLHVQYLRVSEPSNSKYKSIKWVRYSTRAGTC 442
Query: 234 QLR 226
++R
Sbjct: 443 EIR 445
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 37.1 bits (82), Expect = 0.003
Identities = 38/182 (20%), Positives = 81/182 (44%), Gaps = 13/182 (7%)
Frame = -2
Query: 732 ISFIPPDGEFELMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEI 553
I FIPPDG+F L S++ + + + + V+E A ++++ + + + + + N++I
Sbjct: 248 IEFIPPDGKFTLASFQTDFATQKSLPV--VVE--AKNKLDGRFEVRIRNTGKKSVENLKI 303
Query: 552 IIPVPADADS---PKFKTTIGSVKYT-PEQNAITWSIKSFPGGKEYLMRAHFGLP----- 400
+I +P S + + KYT E+ + WS+K L+ F P
Sbjct: 304 LITIPQALKSVTVTEGNYIFRASKYTHMEEGILEWSVKKLAWTSPALVLTGFLAPLKKDA 363
Query: 399 --SVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRY--ITQNGDYQ 232
+ E + +++++ T +V LK++ ++ V++ I QN ++
Sbjct: 364 NSTEESSSYSKLEHLDLQYKLQGSTLHNFKVESLKMLNHPDKKSYKGVKHTIIAQNVSFR 423
Query: 231 LR 226
R
Sbjct: 424 FR 425
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 524 HQNSRQQLVALNIHQNKMRSHGQSNHFQEA 435
+Q + QQL L+I++ K RSH S+ +E+
Sbjct: 62 YQRTLQQLNTLSIYELKNRSHFSSSPVEES 91
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 647 LLLSVMLIQELNT**KLSLSLRDDQLLITLKSLYQFL 537
+LLS IQ+LNT L+LS + LK + Q L
Sbjct: 867 VLLSSSFIQQLNTVENLNLSFNSTDAVYHLKKILQDL 903
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +2
Query: 461 HVIAFCSGVYLTLPIVVLNFGE----SASAGTGIMISTLLAVDRLLN 589
H++ C +Y L IVV FG S G G+ +A+ R++N
Sbjct: 184 HLLVNCVAIYSFLSIVVYKFGVWKALSVYLGAGV-FGNYVALQRMMN 229
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 357 LELGAFHQLPHIQQKADQSE 416
L + FH++PHIQQ QS+
Sbjct: 108 LNMYGFHKVPHIQQGVLQSD 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,872
Number of Sequences: 5004
Number of extensions: 60871
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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