Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_P20
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar... 127 2e-30
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 29 0.59
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 29 0.79
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 3.2
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 26 5.5
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 26 5.5
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 26 7.3
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 26 7.3
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 26 7.3
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 25 9.7
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 25 9.7
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 25 9.7
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 25 9.7
>SPCC970.06 |||cargo receptor for soluble proteins
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 302
Score = 127 bits (306), Expect = 2e-30
Identities = 77/236 (32%), Positives = 119/236 (50%), Gaps = 8/236 (3%)
Frame = +3
Query: 129 LPTVARLCLISTFLEDGLRMWFQWSEQ----RDYMDMSWGCGKFLATMFVIVNLFGQLGG 296
+P + R +++T+ ED +R+ QW EQ RDY +G L +FV V L L G
Sbjct: 54 MPLLGRFLIVATYFEDAIRIVTQWPEQVSYMRDYRRFRFGTAPLL--LFVCVVLM--LVG 109
Query: 297 CVMVLGRLKVDIACGVLFFIVVLQTFAYSILWDVQ-FXXXXXXXXXXXXXXXXXXXXXXX 473
+V+ + + A G L F+ +LQ FAY ++ + F
Sbjct: 110 STLVVFKKRQAYAIGSLLFVTLLQAFAYGLITSGEMFFRNMSVIGGLCLVASDTFIHRRI 169
Query: 474 SLFAGVPSLGENKPKTYLQLAGRILLAFMFITLLRFE---ISFLQIIQDLLGSILMILVT 644
+ FAG+P++ E+ +TY QLAGR+LL FMF+ LL E IS+ +I+ +L +V
Sbjct: 170 NRFAGLPAVSEHNKRTYFQLAGRVLLIFMFLGLLAKEGSGISWTRILVHILSVTACAMVV 229
Query: 645 VGYRTKXXXXXXXXXXXXXXXYHNAWWAVPSYKPLXDFLKYDFFXTLSVIGGLLMI 812
+G++ K N++W+VP P DF +YDFF TLS++GGLL +
Sbjct: 230 IGFKAKFFAAVLVLILSVANFIINSFWSVPRESPYRDFYRYDFFQTLSIVGGLLYL 285
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 29.5 bits (63), Expect = 0.59
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 57 QIPNEYVSTAEDVADQVIRKGKNVLPTVARLCLISTFLEDGLRMWFQ 197
QIP STA+ A+ + ++ + LP V C TF D L +FQ
Sbjct: 41 QIPQIEGSTAKRDAEHLGKRHREFLPRVTAYCTCDTFRVDLLFKFFQ 87
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 29.1 bits (62), Expect = 0.79
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -3
Query: 267 SQTLWRGICRSPRTCPCSLS 208
++TLW ICR RTCP SLS
Sbjct: 352 ARTLW-AICRHLRTCPLSLS 370
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.1 bits (57), Expect = 3.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 162 TFLEDGLRMWFQWSEQRDYMDM 227
T +DGLR+W W +D D+
Sbjct: 181 TIRKDGLRLWGSWKRGKDESDL 202
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 495 TARPRTDCALQREPPPTPAVALRSMPNCGEGTVRPIV 385
TA P L R PPP P +R + +C P++
Sbjct: 255 TAVPTIHQILLRTPPPKPLPRIRFIRSCSSPLAPPVL 291
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 388 SILYANVCNTTMKNSTPQAISTLSLPSTITH 296
+I +N NTT ST Q S+ +PS + H
Sbjct: 48 AIPQSNALNTTPNESTSQIDSSPKIPSAVPH 78
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 361 TTMKNSTPQAISTLSLPST-ITHPP 290
T STPQ +T S P+T THPP
Sbjct: 279 TPQSGSTPQMQNTTSQPTTHDTHPP 303
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 297 ILLIDQINLLSQTLWRGICRSPRTCPCSLS 208
+ L+ +NL S L + +C S + PC L+
Sbjct: 6 LFLLQNVNLESNYLLKRVCLSLKLSPCKLT 35
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 7.3
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = -1
Query: 698 NCQYEDK---HQSRQLRPVAHRHQYHQDAPEKI--LYDLQE*D 585
N +DK H+S R ++ +YHQD P+K Y L+E D
Sbjct: 256 NSMRDDKKRNHKSSYKRSLSPSTRYHQDRPDKRHGTYSLEEID 298
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 534 RVASTSSVCSLRATARPRTDCALQREPPPT 445
R AST++ R A P +Q+ PPPT
Sbjct: 18 RSASTAAALPPRTMAPPPAPSRVQQAPPPT 47
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -2
Query: 364 NTTMKNSTPQAISTLSLP 311
NTTMK+S QA++ ++LP
Sbjct: 226 NTTMKSSLNQALTLINLP 243
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 25.4 bits (53), Expect = 9.7
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3
Query: 168 LEDGLRMWFQW 200
L DG+R+WF+W
Sbjct: 601 LTDGMRVWFEW 611
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -2
Query: 409 RRNCTSHSILYANVCNTTMKNSTPQAISTLSLPSTITHPP 290
R +C H + C+ K +S+++LPS + +PP
Sbjct: 116 RNDCIFHDA--SGACHFFFKEVGNWTVSSIALPSNLANPP 153
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,238,933
Number of Sequences: 5004
Number of extensions: 65570
Number of successful extensions: 200
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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