Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_P20
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0743 + 24835349-24836009,24836925-24837068,24837154-248373... 35 0.067
05_07_0280 - 28920864-28920971,28921076-28921175,28921267-289213... 34 0.12
08_02_1350 - 26312275-26313613,26314833-26315110 31 0.82
03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282 30 1.9
02_04_0605 - 24290777-24290830,24290914-24291075,24291494-242916... 30 1.9
04_04_0734 + 27648661-27649596 30 2.5
05_05_0315 - 24030695-24030787,24030896-24030995,24031120-240312... 29 3.3
05_02_0148 - 7085892-7086011,7086681-7087004,7088258-7088419,708... 29 3.3
01_06_1074 + 34318685-34319314,34319429-34319546,34319662-343198... 29 3.3
08_01_0542 + 4712480-4712635,4712683-4712787 29 4.4
08_01_0437 + 3850137-3850581,3851134-3851159 28 7.7
>01_05_0743 +
24835349-24836009,24836925-24837068,24837154-24837306,
24837627-24837742,24837826-24837993,24838610-24838737,
24838827-24838926,24839119-24839205
Length = 518
Score = 35.1 bits (77), Expect = 0.067
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +2
Query: 347 VLHSCITDIRVQYTMGRTVPSPQFGIDRSATAGVGGGSR*RAQSVRGRAVARREQTEDV 523
VL + D+R YT GR + QFG+ T G R +S+ R +A R+ EDV
Sbjct: 54 VLGRPMEDVRATYTFGRELGRGQFGVTYLVT-HKATGKRFACKSIATRKLAHRDDIEDV 111
>05_07_0280 -
28920864-28920971,28921076-28921175,28921267-28921394,
28922013-28922180,28922280-28922395,28922584-28922736,
28922904-28923047,28923401-28924133
Length = 549
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +2
Query: 347 VLHSCITDIRVQYTMGRTVPSPQFGIDRSATAGVGGGSR*RAQSVRGRAVARREQTEDV 523
VL + D+R YT GR + QFG+ AT G R +S+ R +AR + +DV
Sbjct: 78 VLGRPMEDVRATYTFGRELGRGQFGVTYLAT-HKPTGRRYACKSIAARKLARPDDLDDV 135
>08_02_1350 - 26312275-26313613,26314833-26315110
Length = 538
Score = 31.5 bits (68), Expect = 0.82
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 4/139 (2%)
Frame = -2
Query: 409 RRNC-TSHSILYANVC-NTTMKNSTPQAISTLSLPSTITHPPN*PNKFTITNIVARNLPQ 236
R NC T H++ Y C + +S+P IS L ++ +RN+P
Sbjct: 387 RINCGTLHNVAYQENCWSEAQSSSSPPDISELG-DERGGFSSGEETMYSAETRESRNIPS 445
Query: 235 PQDMS--M*SLCSDHWNHMRRPSSRNVDIRHSRATVGKTFLPFRIT*SATSSAVDTYSLG 62
P++ + M NH + S ++V+ + TF+P R ++A+ S
Sbjct: 446 PKEKNPKMVGRSQSFVNHSKWDSPKSVESSKGAPSKSHTFIPLRKP-HLQAAAISQKSQD 504
Query: 61 ICIFHAEHSTNTEKRNLTE 5
F S++ +KRNL++
Sbjct: 505 --FFSPTVSSSMKKRNLSQ 521
>03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282
Length = 367
Score = 30.3 bits (65), Expect = 1.9
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +2
Query: 167 PGGRSPHVVPVVRAERLHGHVL-GLRQIPRHNVCDS--KFIWSIRRMCYGARKAQSGYRL 337
PGG S G V G R+ + V D+ + + +RR+ YG R+ SG RL
Sbjct: 97 PGGGSARSAAAAAPTGRPGTVAAGTRRAGKKAVLDAGGRRVGHLRRLSYGVRERGSGRRL 156
Query: 338 RRAVLHSCITDIRVQYTMG 394
R L C+T+ V + G
Sbjct: 157 TR--LGWCMTEFGVDHGGG 173
>02_04_0605 -
24290777-24290830,24290914-24291075,24291494-24291694,
24291777-24291961,24292117-24292246
Length = 243
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 732 PSYKPLXDFLKYDFFXTLSVIG 797
PSY PL + +K+ FF LS++G
Sbjct: 70 PSYLPLPELVKFVFFANLSIVG 91
>04_04_0734 + 27648661-27649596
Length = 311
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 474 CALQREPPPTPAVALRSMPNCGEG 403
CA PPP+PA L+ +P C G
Sbjct: 205 CAPPPNPPPSPATPLQPLPECDGG 228
>05_05_0315 -
24030695-24030787,24030896-24030995,24031120-24031247,
24031350-24031517,24031626-24031741,24031773-24031896,
24032085-24032254,24032255-24032999
Length = 547
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 347 VLHSCITDIRVQYTMGRTVPSPQFGIDRSATAGVGGGSR*RAQSVRGRAVARREQTEDV 523
VL + D++ YT+G+ + QFG+ S G R +++ R ++ +E EDV
Sbjct: 56 VLGRPMEDVKSIYTVGKELGRGQFGV-TSLCTHKATGQRFACKTISKRKLSTKEDVEDV 113
>05_02_0148 -
7085892-7086011,7086681-7087004,7088258-7088419,
7088866-7089066,7089148-7089332,7089459-7089588
Length = 373
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 732 PSYKPLXDFLKYDFFXTLSVIG 797
PSY P+ + +K+ FF LS++G
Sbjct: 70 PSYLPVPELIKFVFFANLSIVG 91
>01_06_1074 +
34318685-34319314,34319429-34319546,34319662-34319814,
34319906-34320021,34320135-34320302,34320424-34320551,
34320645-34320744,34320866-34320958
Length = 501
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 347 VLHSCITDIRVQYTMGRTVPSPQFGIDRSATAGVGGGSR*RAQSVRGRAVARREQTEDV 523
VL + D+R YT+G+ + QFG+ S G + +++ R ++ +E EDV
Sbjct: 49 VLGRPMEDVRSIYTIGKELGRGQFGV-TSLCTHKATGQKFACKTIAKRKLSTKEDVEDV 106
>08_01_0542 + 4712480-4712635,4712683-4712787
Length = 86
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +1
Query: 151 ALYPHSWRTVSACGSSGQ---SRETTWTCPGAAANSS 252
A+ H+W +CGSSG + ETT T P A S
Sbjct: 14 AMIAHAWHDDGSCGSSGAAAIAAETTQTAPTTEARIS 50
>08_01_0437 + 3850137-3850581,3851134-3851159
Length = 156
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 438 VALRSMPNCGEGTVRPIVYCTRMSVIQL*RTARRKRYP 325
V LRS P CG R +V+C +Q ARR+R P
Sbjct: 12 VQLRSHP-CGPPMGRTMVWCLHQDSVQRCAHARRRRRP 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,716,431
Number of Sequences: 37544
Number of extensions: 506997
Number of successful extensions: 1791
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1788
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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