Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_P20
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   7.8  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -3

Query: 297 ILLIDQINLLSQTLWRGICRSPRTCPCSLSALTTGTTCGDRPP 169
           ++ +D+   +++ L  G+ R+PR     +S +  G  C   PP
Sbjct: 134 MISVDRFCAITKPLKYGVKRTPRRMIVYVSLVWLGAACISLPP 176


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +2

Query: 386 TMGRTVPSPQFGIDRSATAGVGGGSR*RAQSVRGRAVARREQTEDVLATRRSHPTG 553
           T     P+P      SA AG  GG+     +  G+  AR   ++D LA   S P G
Sbjct: 46  TTAAATPTPPSVPVGSAVAGTAGGALFPGMAAAGKGAAR---SDDWLANANS-PVG 97


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -1

Query: 335 SDIHFEPS*HHNTSS*LTK*IYYHKHCGEEFAAAPGHVHVVSL 207
           ++++  P  HH+T       I+   H     AA P H H   L
Sbjct: 406 NNVYSTPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPL 448


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 425 DRSATAGVG--GGSR*RAQSVRGRAVARREQTEDVLATR 535
           DRS  A +G   G + R  S    ++  RE+TED   T+
Sbjct: 24  DRSRIARLGRDDGGKSRQSSFEVTSLLMREETEDAEDTQ 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,884
Number of Sequences: 438
Number of extensions: 5048
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)