Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_P19
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    27   1.7  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   6.8  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    25   9.0  

>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 444 FSIFLFVYGLLSLLSAVRCMERLTKYY 524
           F  F  VYGL+SL  A+RC+   TK +
Sbjct: 216 FLSFSIVYGLISLWWAIRCICSRTKLH 242


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 409 FLVYSIIMYSTDSVFFCLFMVYYRCC 486
           FL++S++ +S      C+F ++ R C
Sbjct: 831 FLLWSVVAFSVFRFIGCIFYLFIRLC 856


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 209 TCSNTFSNKT--NNQYNKHIRAALLVSGAAPHAGGPTTNDNT 90
           T S + +N T  NN  + ++R  L +SG    +GGPT   +T
Sbjct: 142 TASMSPANNTSGNNITSPNVRGELDMSGNIAMSGGPTNTAST 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,842
Number of Sequences: 5004
Number of extensions: 44284
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)