Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_P19
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21317-12|AAN60539.1|  697|Caenorhabditis elegans Hypothetical p...    29   2.1  
U21317-10|AAA62529.1|  753|Caenorhabditis elegans Hypothetical p...    29   2.1  
CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical ...    29   2.1  
L11247-7|AAA28003.3|   91|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AY255665-1|AAQ96602.1|   91|Caenorhabditis elegans MiRP2 protein.      28   4.8  
AF047658-3|ABC71828.1|  315|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z75710-2|CAB00025.2|  381|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AF078157-18|AAG24080.1|  338|Caenorhabditis elegans Seven tm rec...    27   8.3  

>U21317-12|AAN60539.1|  697|Caenorhabditis elegans Hypothetical
           protein B0495.10c protein.
          Length = 697

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -2

Query: 361 FLIMKNIQHLFIIFKSNK*LFLIIN---ITRKPCKRTCQSKCNNVNEKETDAETH 206
           FL   +++  F+ F  N  LFL+ +   + R P K     +C+ + E + DAE H
Sbjct: 24  FLHPPSVKRFFLFFLLN--LFLLSSKQKLMRLPIKIAVDCRCSGIAENQCDAELH 76


>U21317-10|AAA62529.1|  753|Caenorhabditis elegans Hypothetical
           protein B0495.10a protein.
          Length = 753

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -2

Query: 361 FLIMKNIQHLFIIFKSNK*LFLIIN---ITRKPCKRTCQSKCNNVNEKETDAETH 206
           FL   +++  F+ F  N  LFL+ +   + R P K     +C+ + E + DAE H
Sbjct: 24  FLHPPSVKRFFLFFLLN--LFLLSSKQKLMRLPIKIAVDCRCSGIAENQCDAELH 76


>CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical
           protein C42C1.1 protein.
          Length = 347

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = +3

Query: 414 SI*YYYV*YRFSIFLFVYGLLSLLSAVRCMERLTKYYYFLCVTIF*YTYICVGILLFYID 593
           +I +Y+   RF+  +F + +L  +  +     +  +Y  LC+T+F  ++    IL  YI 
Sbjct: 213 NIHFYFFFIRFASSIFFFTILCPVLMLVASFEIDWFYRNLCITLFELSFSVYTILTPYII 272

Query: 594 XKKNL 608
            K N+
Sbjct: 273 YKFNI 277


>L11247-7|AAA28003.3|   91|Caenorhabditis elegans Hypothetical
           protein F09G8.9 protein.
          Length = 91

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 513 TKYYYFLCVTIF*YTYICVGILLFYIDXKKN 605
           TKY+ FL V I  + ++C+  LL +I+   N
Sbjct: 39  TKYFDFLLVIIMTFVFLCLVYLLIWIEVLLN 69


>AY255665-1|AAQ96602.1|   91|Caenorhabditis elegans MiRP2 protein.
          Length = 91

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 513 TKYYYFLCVTIF*YTYICVGILLFYIDXKKN 605
           TKY+ FL V I  + ++C+  LL +I+   N
Sbjct: 39  TKYFDFLLVIIMTFVFLCLVYLLIWIEVLLN 69


>AF047658-3|ABC71828.1|  315|Caenorhabditis elegans Hypothetical
           protein K03H6.4 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 415 VYSIIMYSTDSVFFCLFMVYY 477
           +YS+IM+ + + F C+F+VY+
Sbjct: 253 LYSLIMFKSIANFLCMFLVYH 273


>Z75710-2|CAB00025.2|  381|Caenorhabditis elegans Hypothetical
           protein D1081.4 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = -2

Query: 304 LFLIINITRKPCKRTCQSK----CNNVNEKETDAETHAVIL 194
           + L+ N T KPC   C SK    C  + E+E  A  H ++L
Sbjct: 130 VLLVANKTDKPCLSCCASKSNMECCALREEEVRACFHEILL 170


>AF078157-18|AAG24080.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 28 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 412 LVYSIIMYSTDSVFFCLFMVYYRCCLLYGVWS 507
           LVYS  MY     F C+  +Y  C L   +WS
Sbjct: 93  LVYSA-MYGILIAFLCIQFIYRACVLARPIWS 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,564,965
Number of Sequences: 27780
Number of extensions: 251324
Number of successful extensions: 720
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)