Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_P17
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   3.3  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   3.3  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    27   4.3  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   5.7  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   5.7  
SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   5.7  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   5.7  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    26   7.6  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   7.6  

>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 200 KRRPISCGTLAPCSLHLRSVWLCCVPDNPINK 295
           ++R I C  L PC   ++S   C  P++PI +
Sbjct: 23  RQRKIKCDRLHPCFQCVKSNSQCFYPEDPIRR 54


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 490 NPVSVKETTSHDCTVKGTNGRLRKHSLMSMKRCW 389
           +P S KE   H       N R+R+ SL  + RCW
Sbjct: 433 DPESRKELDKHSDWHFRINKRIRESSLHGINRCW 466


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
 Frame = +2

Query: 98  ITKQNGP*AENAYRQRDRQ*KHHNEGECTQNY*GKRRPISCGTLAPCSLHLRSVWLCCVP 277
           +TK   P ++ A +  D   +H N+G  T  Y G   P+     +   L    V  C   
Sbjct: 46  VTKAYYPSSQQALKLYDLLREHRNKGTATLTY-GVVDPVLASQASKAGLETIFVSGCLCG 104

Query: 278 DNPINKTSLNHED-NWRT---AIENTTK*QHYPSKVKARF 385
            + +++  ++H D  W T   A++   + Q++ ++ + +F
Sbjct: 105 LSSVDEPGMDHADYPWDTVPKAVDRIFRSQNWHARRQKQF 144


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 229 QGATGYWSSFSLVVLGTFPLIVMFLLA 149
           Q  TG W+   +V+   F ++V+FLLA
Sbjct: 146 QNVTGNWTWAHVVICYVFNVLVLFLLA 172


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -2

Query: 281 YLEH-SRATHYEDEESKEP 228
           Y EH +  +HYE+EE +EP
Sbjct: 782 YFEHETEPSHYEEEEEEEP 800


>SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 157

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 390 QHLFIDMRECFRRRPLVPLTVQSWLVVSFTLTGLKRDADT 509
           + L  D+   F+    +PL   ++LV +FTL G+    DT
Sbjct: 41  EELAFDLEPYFQVVSSIPLEKHTFLVTNFTLRGIDFFVDT 80


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +2

Query: 212 ISCGTLAPCSLHLRSVWLCCVPDNPINKTSLNHED 316
           I CG LA   + L  V L  VPDNP     L  ED
Sbjct: 227 IICGVLA---IFLGFVILAVVPDNPFKAWFLTEED 258


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 611 WNLWLELSLKIILKKRQKFIE 549
           WN+WL    KI  K++ KF E
Sbjct: 370 WNMWLSQVQKINEKEKDKFYE 390


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +1

Query: 514 VIRDVEVSVVEFS-MNFCLFFNIIFKDNSSHKFH*NVMNKVIVFFYLNIFSIFS*LCMRQ 690
           V+ D++  V E + +N+ L F    + + + + H  ++  V  FF   IFS+F  LCMR 
Sbjct: 317 VLFDLDCYVWEKTRVNYMLIFEFNQRKSLNWRQHLEIVGAV--FF---IFSLFFFLCMRN 371

Query: 691 *IPXMT 708
             P  T
Sbjct: 372 FFPGFT 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,299,523
Number of Sequences: 5004
Number of extensions: 68179
Number of successful extensions: 179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)