Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_P17
         (834 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         27   0.93 
L10441-1|AAA29361.1|  154|Anopheles gambiae transposase protein.       24   6.6  
L10438-1|AAA29359.1|  154|Anopheles gambiae transposase protein.       24   6.6  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 365 SKVKARFTPASLHRHERVFSEAAISTFNCAIVAC 466
           ++ K R  PA+LH H++V ++  I    C  V C
Sbjct: 414 NRPKDRNQPATLHHHQQVHNQQRILYCFCRNVEC 447


>L10441-1|AAA29361.1|  154|Anopheles gambiae transposase protein.
          Length = 154

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -1

Query: 636 DYFIHYILMEFVA*VVFKNYIEKETKIHRKFYNRYL-NVPNNLMYRRPVL 490
           D  + Y+ ++    ++F +YIEK   I+ ++Y + L  + + +  +RP L
Sbjct: 70  DKVMAYVFLDSQG-IIFIDYIEKGKTINSEYYIKLLERLKDEIATKRPHL 118


>L10438-1|AAA29359.1|  154|Anopheles gambiae transposase protein.
          Length = 154

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -1

Query: 636 DYFIHYILMEFVA*VVFKNYIEKETKIHRKFYNRYL-NVPNNLMYRRPVL 490
           D  + Y+ ++    ++F +YIEK   I+ ++Y + L  + + +  +RP L
Sbjct: 70  DKVMAYVFLDSQG-IIFIDYIEKGKTINSEYYIKLLERLKDEIATKRPHL 118


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 823,775
Number of Sequences: 2352
Number of extensions: 17882
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88065063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)