Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_P13
         (809 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal t...    30   2.3  
AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal t...    30   2.3  
AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein ...    30   2.3  
AL032630-5|CAA21569.2|  165|Caenorhabditis elegans Hypothetical ...    28   6.9  
AF440516-1|AAL34104.1|  184|Caenorhabditis elegans SKR-15 protein.     28   6.9  
AF099917-7|AAC68782.1|  184|Caenorhabditis elegans Skp1 related ...    28   6.9  

>Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical
           protein W09D6.6 protein.
          Length = 801

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 403 VPNKTPISSTYKQMTRTSATSSTKLTMDSIV 495
           +PN    ++ Y++MT   A+S++KLT+  I+
Sbjct: 44  IPNSNSANNNYRRMTDDDASSTSKLTISKIL 74


>AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 403 VPNKTPISSTYKQMTRTSATSSTKLTMDSIV 495
           +PN    ++ Y++MT   A+S++KLT+  I+
Sbjct: 44  IPNSNSANNNYRRMTDDDASSTSKLTISKIL 74


>AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 403 VPNKTPISSTYKQMTRTSATSSTKLTMDSIV 495
           +PN    ++ Y++MT   A+S++KLT+  I+
Sbjct: 44  IPNSNSANNNYRRMTDDDASSTSKLTISKIL 74


>AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein
           protein.
          Length = 801

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 403 VPNKTPISSTYKQMTRTSATSSTKLTMDSIV 495
           +PN    ++ Y++MT   A+S++KLT+  I+
Sbjct: 44  IPNSNSANNNYRRMTDDDASSTSKLTISKIL 74


>AL032630-5|CAA21569.2|  165|Caenorhabditis elegans Hypothetical
           protein Y62H9A.5 protein.
          Length = 165

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +3

Query: 354 LVLVFACSSLAALDGYSPQQDPDQFHIQTDDEDERYFLYQTHNGQYRKERR 506
           L+L  AC ++ A DGY    DP             Y +Y   +   R+ RR
Sbjct: 4   LILTVACIAMVAADGYGAASDPSYPAPGPSYGGGGYPIYSDEDSDSREHRR 54


>AF440516-1|AAL34104.1|  184|Caenorhabditis elegans SKR-15 protein.
          Length = 184

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 351 LLVLVFACSSLAAL-DGYSPQQDPDQFHIQTDDEDER 458
           + +L + C  +A L  G SP++    F I TD+EDE+
Sbjct: 128 MTLLTYCCKFIAGLAKGMSPEEMRVFFCIPTDEEDEK 164


>AF099917-7|AAC68782.1|  184|Caenorhabditis elegans Skp1 related
           (ubiquitin ligasecomplex component) protein 15 protein.
          Length = 184

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 351 LLVLVFACSSLAAL-DGYSPQQDPDQFHIQTDDEDER 458
           + +L + C  +A L  G SP++    F I TD+EDE+
Sbjct: 128 MTLLTYCCKFIAGLAKGMSPEEMRVFFCIPTDEEDEK 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,061,733
Number of Sequences: 27780
Number of extensions: 400678
Number of successful extensions: 1053
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)