Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_P11
(869 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0015 - 98311-98412,98635-98707,98830-98921,99139-99230,993... 33 0.30
09_03_0040 + 11816056-11819069,11819837-11820428 32 0.52
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665... 31 0.91
05_03_0608 + 16153992-16154960,16158959-16159168,16159252-161595... 30 2.8
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 29 3.7
06_03_1384 + 29786028-29786657,29788581-29788711,29788987-297890... 29 6.4
10_08_1063 - 22628642-22628716,22628806-22629012,22629325-226294... 28 8.5
07_03_1687 - 28673491-28674822 28 8.5
04_04_0437 + 25193263-25194627 28 8.5
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012... 28 8.5
02_01_0457 - 3283759-3285240 28 8.5
>02_01_0015 -
98311-98412,98635-98707,98830-98921,99139-99230,
99363-99432,99683-99781,100008-100093,100541-100655,
100853-100918,101064-101143,101226-101301,101915-102151,
102559-102590,102993-103047,103384-103498,104497-104579,
105182-105232,105740-105802,105945-106010,106144-106279,
106503-106591,106844-106964,107138-107340,107434-107820
Length = 862
Score = 33.1 bits (72), Expect = 0.30
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 316 STLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPIIEDYHNGFK 456
S LLD + E D +++PD+ + VF+++ +P+++D G K
Sbjct: 103 SKLLDPKRGRTEVFDGFSSVFSPDSSQHDVFSQVMNPLVDDLLLGGK 149
>09_03_0040 + 11816056-11819069,11819837-11820428
Length = 1201
Score = 32.3 bits (70), Expect = 0.52
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +3
Query: 585 PLPHRVPVQGD-GGQGLRHPVQPRGRAQGHFLPPHRHV--EGDPAAAHRRPLP 734
P P PV GD G +G+ V +G A+G + P R V G P AA P P
Sbjct: 49 PPPPTAPVAGDDGSKGVEGVVANQGGAEGVAVSPDRSVPLSGGPTAASSLPPP 101
>04_03_0256 -
13564070-13564456,13564543-13565299,13565734-13566535,
13566884-13566917
Length = 659
Score = 31.5 bits (68), Expect = 0.91
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Frame = -1
Query: 707 WVSFDMP----VRG*KVPLSSPSRLDRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRV 540
W SFD P V G + + + P + +Y ++ G+ GY S PQ
Sbjct: 170 WQSFDHPTDALVPGQSLLQGMILKANTSPTNWTESKIYITILQDGVYGYVESTPPQLYYN 229
Query: 539 ETTNSPAGSRLPSVSTSPQFLGGCLSVFLK 450
++ R+P+ T F GC S+F++
Sbjct: 230 YVVSTNKSKRVPTTVT---FTNGCFSIFVQ 256
>05_03_0608 +
16153992-16154960,16158959-16159168,16159252-16159512,
16160153-16160197,16160324-16160410,16160679-16160774
Length = 555
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +3
Query: 195 LEKLEAGFSKLQGSDSKSLLKKYLTRXSIRQPEEQK 302
+EKLEA SK+ G D L K R +IR E+ K
Sbjct: 434 IEKLEAAASKIFGGDKSRLRKVEELRETIRATEDAK 469
>02_02_0704 +
13095449-13095584,13095671-13095990,13096102-13096423,
13096556-13096632,13096744-13097127
Length = 412
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 425 GSKSSANTEYDSASGA*IPTPESKFSTPDWMQS 327
G K A T + S P PE+K TPDW+QS
Sbjct: 100 GKKEEAETS-ERHSSPPPPPPEAKKVTPDWLQS 131
>06_03_1384 +
29786028-29786657,29788581-29788711,29788987-29789028,
29789383-29789441,29789774-29790070,29790180-29790289,
29790966-29791070,29791201-29791263,29791766-29791933,
29792111-29792248
Length = 580
Score = 28.7 bits (61), Expect = 6.4
Identities = 23/69 (33%), Positives = 28/69 (40%)
Frame = +3
Query: 558 PLARGVPLQPLPHRVPVQGDGGQGLRHPVQPRGRAQGHFLPPHRHVEGDPAAAHRRPLPV 737
P A G+P P + Q Q + P + RG G P H+ P A P P
Sbjct: 28 PPANGLPSTPPRQQAQAQA---QQVGTP-RRRGSKSGSTTPGHQ----TPGVAWPSPYPS 79
Query: 738 QGGRPLPAG 764
G PLPAG
Sbjct: 80 GGASPLPAG 88
>10_08_1063 -
22628642-22628716,22628806-22629012,22629325-22629433,
22629547-22629657,22630466-22630513,22630636-22630713,
22632151-22632254,22632360-22632470,22632555-22632791
Length = 359
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 558 PLARGVPLQPLPHRVPVQGDGGQGLRHPVQP 650
P+ RG Q PH++ + D G G+++P P
Sbjct: 322 PMQRGAGAQSHPHQLRRKADQGMGMQNPGYP 352
>07_03_1687 - 28673491-28674822
Length = 443
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -3
Query: 153 CNKLGPHRRRLQPESLLLAYNSS*KIAN 70
C+ G + R L+PE+LLL NS+ K+++
Sbjct: 126 CHSRGVYHRDLKPENLLLDENSNLKVSD 153
>04_04_0437 + 25193263-25194627
Length = 454
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 295 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELF 420
N TS GS D I+ G N+D YAP+ S+ A F
Sbjct: 365 NYFTSLGSCCWDLIKEGKLNVDRNCIPYAPNQRSHDECAAFF 406
>04_03_0999 -
21600231-21600788,21600896-21601056,21601149-21601241,
21601379-21601531,21601917-21601992,21602078-21602197,
21602348-21602597,21602917-21603008,21603408-21603581
Length = 558
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 563 ERPQRTRVETTNSPAGSRLPSVSTSPQFLGGCLSVF 456
+RP+ +RV T +R+P + +++ G LS F
Sbjct: 36 KRPRSSRVAQTRPQPEARIPGTQSDSEYMSGQLSAF 71
>02_01_0457 - 3283759-3285240
Length = 493
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -3
Query: 153 CNKLGPHRRRLQPESLLLAYNSS*KIANTQDLKAATEEGALRGL 22
C+ G + R L+PE+LLL N S K+++ L A +E GL
Sbjct: 125 CHSRGVYHRDLKPENLLLDENESLKVSDF-GLSALSESKRHDGL 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,663,914
Number of Sequences: 37544
Number of extensions: 490881
Number of successful extensions: 1925
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1924
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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