Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_P10
(787 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.06c |mrpl4||mitochondrial ribosomal protein subunit L4|S... 64 3e-11
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy... 27 3.0
SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.0
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 27 4.0
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 7.0
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 26 7.0
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 26 7.0
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 26 7.0
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 25 9.3
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 25 9.3
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 9.3
>SPCC4G3.06c |mrpl4||mitochondrial ribosomal protein subunit
L4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 144
Score = 63.7 bits (148), Expect = 3e-11
Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Frame = +2
Query: 188 TQDLMEFFDAKKNWPETN--IRVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTMEHE 361
T L FF K+ P + + GRAW +ELR KS DLH LWY L+E+N+L+T E
Sbjct: 35 THPLWNFFRDKQALPPPSEEAKFGRAWAAEELRWKSFNDLHGLWYNCLREKNLLFTQRAE 94
Query: 362 CNERVRLFP--NPERIDKVEESMNNIESVIRERNIAY 466
P + ER+ V ++M I+ V+ ER AY
Sbjct: 95 MKRLQLTIPKASNERVLAVNKTMAAIKFVLWERQRAY 131
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -2
Query: 699 SLLCAFLTSLWIFSLYNLLNFFTAKLLMKPCFRYGLT-QRVFINLGVSYSDG 547
SLL + L+ FS+ L F K ++P + Y L +R I L ++ DG
Sbjct: 33 SLLSFLIYILYTFSISGLSTFVITKYYIRPQWLYTLALRRALIKLYYNFMDG 84
>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 231
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 578 NTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKAHNRD 700
N +W+ P LKHG ++ K L N IH + + +D
Sbjct: 150 NGQWITPSLKHGLLSGTMRKNL--LENGSIHEDDKGLLQKD 188
>SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 107
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/102 (16%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Frame = -2
Query: 426 FIDSSTLSILSGFGNSRTLSLHSCSIV*SILRSFKSTYHNLCKSVLDFNRNSSSFQALPT 247
FI ++T + FGN+ + L + ++ R + +++C F + SF+ L
Sbjct: 6 FILNATFKEFACFGNNYLIILPGIMLERNVFRHLNYSTNSICSHYQFFGGHYESFELLVV 65
Query: 246 LILVSGQFFFASKNSIKSC-VGLVVWKSLLTIQAAAVLIDFC 124
++ ++F+ S + + W + + + +C
Sbjct: 66 IV-----YYFSHVGSFSLAEIYRITWDKRIVLYGTTTTLVYC 102
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 302 HKLWYVLLKERNMLYTMEHECNERVRLF-PNPERIDKVEESMNNI 433
H+LWY L+E + Y +H+ + + + P E ++K +++ I
Sbjct: 1823 HELWYEGLEEASQAYFSDHDISLMIDIVKPLHETLEKGPSTLSEI 1867
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 93 FEVPLHYV--CDHKNLSTQQQLVLLKGISTQPNLRKI*WNSLMQRRIGL 233
FE LH V D + + +Q L+L ++ P RK+ WN L+ + L
Sbjct: 939 FEPALHTVENFDLTDCADEQILLLSSFVNFVPLFRKVIWNLLLNNKEAL 987
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 80 IKNIFRSTTTLCMRSQKSINTAAACI-VKRDFHTTKPTQDLMEFFDAK 220
+K++ + T L RS N AC ++++ +QD++EF DAK
Sbjct: 232 LKSVMWTFTLLISRS--CFNDDQACERIRKNLEQCSVSQDVLEFIDAK 277
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 712 DMVKVSIV-CFPHFAMDFFIIQSSKLFYCQTVDEAMF*IWSYPT 584
DM+K+S+V C + + LF+ +D +++ WS PT
Sbjct: 218 DMLKLSLVGCVKEGIVHPVTVVDYLLFHLNRIDPSLYSKWSLPT 261
>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 168 SLLTIQAAAVLIDFCDRIHNVVVL 97
S+L A A +I+ D++HNVV+L
Sbjct: 6 SVLPSNACAEIIEGKDKVHNVVIL 29
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -3
Query: 419 ILQLCQFFLDLGTVEPFRCTHVP*CKAYYVLSKVHTTICANLYWTLIATR 270
+LQ+C L+ +E R YV +H TI + L+W ++ R
Sbjct: 427 VLQMCSVMLN--DIENSRFIDQSIHMENYVSKGLHVTILSRLFWPTLSVR 474
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 450 NVILLTTSLKQVKLENAL 503
NV +TTSL++VKL+N L
Sbjct: 305 NVAGMTTSLREVKLDNKL 322
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 490 WRTPCERCYKS-YRNARKVSTVRIRYT*IYEHTLGKTISKTW 612
WR+ E+C+K+ Y + T R+R ++ L T S W
Sbjct: 478 WRSTYEQCFKNYYETIHRYETNRLRNIALFFANLLSTDSIGW 519
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,466,544
Number of Sequences: 5004
Number of extensions: 79014
Number of successful extensions: 229
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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