Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_P10
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0195 + 1512978-1513207,1513938-1513945,1514040-1514197,151... 84 1e-16
07_01_0665 + 5001599-5003149 30 1.8
03_03_0194 + 15319764-15319982,15320377-15320481,15320523-15320621 30 1.8
09_06_0248 + 21848346-21848907,21849026-21849583,21849889-218499... 30 2.4
07_03_1788 + 29523216-29524867,29525048-29525075 28 7.3
01_05_0712 - 24531654-24531874,24532438-24532538,24532621-245327... 28 7.3
08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245... 28 9.7
02_02_0233 + 8105765-8107840 28 9.7
01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235... 28 9.7
>06_01_0195 +
1512978-1513207,1513938-1513945,1514040-1514197,
1514990-1515097
Length = 167
Score = 84.2 bits (199), Expect = 1e-16
Identities = 40/72 (55%), Positives = 50/72 (69%)
Frame = +2
Query: 248 VGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTMEHECNERVRLFPNPERIDKVEESMN 427
+GR+WK ELRLKS DL KLWYVLLKE+NML + + FPNPER+ KV++SM
Sbjct: 79 LGRSWKASELRLKSWDDLQKLWYVLLKEKNMLMSQRQMLHSENMRFPNPERVSKVKKSMC 138
Query: 428 NIESVIRERNIA 463
I+ V+ ER IA
Sbjct: 139 RIKHVLTERAIA 150
>07_01_0665 + 5001599-5003149
Length = 516
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 191 QDLMEFFDAKKNWPETNIRVGRAWK 265
+D+M+ DA +N E RVGRAWK
Sbjct: 241 KDIMDDLDAFRNGKEYYARVGRAWK 265
>03_03_0194 + 15319764-15319982,15320377-15320481,15320523-15320621
Length = 140
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 245 RVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTMEHECNERVRLF 385
+ G +W L +R + WY L K R + + HEC+E V +F
Sbjct: 20 KFGTSWYLSNMRYHEVPKFYTSWY-LFKNRRI--ALNHECSEVVMVF 63
>09_06_0248 +
21848346-21848907,21849026-21849583,21849889-21849980,
21850122-21850167,21850236-21850423
Length = 481
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = -2
Query: 183 LVVWKSLLTIQAAAVLIDFCDRIHNVVVLRKIFFIITSIHAYTIYFLMTS 34
L + + + + AA++ D+ +HN+ +LR+ +I TSI ++ + L S
Sbjct: 127 LTLIRDPVDVDAASLQRDYLRSLHNIALLRRALWIWTSIESHHLRQLTNS 176
>07_03_1788 + 29523216-29524867,29525048-29525075
Length = 559
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 584 RWVRPYLKHGFINSLAVKKFRRL-YNEKIHSEVRKAHNRDFNHVQHL 721
R RP+L FI L R+ ++ ++H+ V KAH R F+ + L
Sbjct: 153 RIARPFLPRDFIALLHDLAAHRMGFSNRVHAAVAKAHLRAFDKFRGL 199
>01_05_0712 -
24531654-24531874,24532438-24532538,24532621-24532716,
24532951-24533048,24533827-24533883,24534764-24534895,
24535042-24535155,24535227-24535359,24535448-24535678,
24535761-24535843,24536009-24536137,24536504-24536599,
24536719-24536773,24537316-24537386,24537472-24537525,
24537691-24537768,24537985-24538117,24539381-24539496,
24539580-24539651,24540113-24540218,24540657-24540772,
24541170-24541319,24541410-24541492,24541591-24541669,
24542645-24542695
Length = 884
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 245 RVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTMEHECNERVRLFPNPERID 406
R A++L LK++ H W+V +LY + E E ++ + N RID
Sbjct: 58 RKSEAYELVRRGLKNDLKSHVCWHVY----GLLYRSDREYREAIKCYRNALRID 107
>08_01_0002 -
20208-20594,21525-21671,21754-21917,22005-22162,
24533-24826,24916-25121,25216-25812,26366-27097
Length = 894
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 681 LTSLWIFSLYNLLNFFTAKLLMKPCFRYGLTQRVFINLG 565
L +LW+ L ++L T KLL C Y L + VF N G
Sbjct: 799 LRALWV--LQDVLMPITLKLLTALCVPYALAKGVFPNFG 835
>02_02_0233 + 8105765-8107840
Length = 691
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -2
Query: 276 NSSSFQALPTLILVSGQFFFASKNSIKSCVGLVVWKSLLTIQAAAV 139
N ++ L L+ ++ QFF+ KN+ + VG+ +W + AV
Sbjct: 285 NYDAYYNLCNLLDLAFQFFYTKKNTNYTIVGIFLWVLFFLLGITAV 330
>01_06_0836 -
32321431-32321556,32321656-32321872,32321975-32323590,
32323670-32323753,32323834-32324104,32324294-32324547,
32324709-32324918,32325839-32326024
Length = 987
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +2
Query: 299 LHKLWYVLLKERNMLYTMEHECNERVRLFPNPERIDKVEESMNNIESVIRERNIAYYKLE 478
LH+ VLLKE+ +L + ER+ + E+ +VEE N +E+ + YKLE
Sbjct: 239 LHEKEEVLLKEQALLNQRDENILERLAYVTHSEK--RVEEEKNILEAERKVLLEEKYKLE 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,834,568
Number of Sequences: 37544
Number of extensions: 412784
Number of successful extensions: 1035
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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