Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_P09
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 60 3e-10
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 52 1e-07
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 36 0.005
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 29 1.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 1.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 1.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.1
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.4
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 26 7.1
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 7.1
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 60.5 bits (140), Expect = 3e-10
Identities = 51/190 (26%), Positives = 97/190 (51%), Gaps = 24/190 (12%)
Frame = +2
Query: 212 SLSKELRHFHTSHAVNKIVA-FKLSDIGEGIREVVIKEWFVKVGDNVQQFDNICEVQSDK 388
SLS + R+FH S A+N + + F++ + + E I +W K GD+ + D + EV++DK
Sbjct: 18 SLSVKQRYFHCS-ALNGVASMFRMPALSPTMEEGNITKWHFKEGDSFKSGDILLEVETDK 76
Query: 389 AAVTITSRYDGIITRLYHDIDQTALVGQPLVDI-DVQDSENDGK-PTDAAPD-------- 538
A + + + +GI+ ++ + VG+ + + D +D+ D + P D A
Sbjct: 77 ATMDVEVQDNGILAKVLIEKGSNIPVGKNIAIVADAEDNLKDLELPKDEASSEEQSFSSS 136
Query: 539 ----KPVAE-------IDAPKTEQ-NQKIKVLTTPAVRRIAAQFKVDLS-AVKATGRNGR 679
KP+ + ++ T Q N + P+V + Q+K++ ++ ATG +GR
Sbjct: 137 KEEVKPIVQDRETKSNVEHKSTSQANDAVNKSFLPSVSYLIHQYKIENPWSIPATGPHGR 196
Query: 680 VLKEDMLSHL 709
+LK D+L+H+
Sbjct: 197 LLKGDVLAHV 206
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 51.6 bits (118), Expect = 1e-07
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 23/145 (15%)
Frame = +2
Query: 332 KVGDNVQQFDNICEVQSDKAAVTITSRYDGIITRLYHDIDQTAL-VGQPLV--------- 481
K+GD ++ D +CE+++DKA + + +G + ++ + + VG+PL
Sbjct: 76 KIGDKIEPGDVLCEIETDKAQIDFEQQDEGYLAKILIETGTKDVPVGKPLAVTVENEGDV 135
Query: 482 ----DIDVQDSENDGKPTDAAPDK--PVAEIDAPKTEQNQKI-------KVLTTPAVRRI 622
D ++DS + +K P +E + +T + +V +P R++
Sbjct: 136 AAMADFTIEDSSAKEPSAKSGEEKSAPSSEKQSKETSSPSNVSGEERGDRVFASPLARKL 195
Query: 623 AAQFKVDLSAVKATGRNGRVLKEDM 697
A + +DLS ++ +G NGR++K D+
Sbjct: 196 AEEKDLDLSQIRGSGPNGRIIKVDI 220
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 36.3 bits (80), Expect = 0.005
Identities = 27/105 (25%), Positives = 44/105 (41%)
Frame = +2
Query: 293 EGIREVVIKEWFVKVGDNVQQFDNICEVQSDKAAVTITSRYDGIITRLYHDIDQTALVGQ 472
E I E + +W + G+ V + + I V++DK +T+ G++ T + Q
Sbjct: 52 ESITEGTLAQWLKQPGEYVNKDEEIASVETDKIDAPVTAPDAGVLKEQLVKEGDTITIDQ 111
Query: 473 PLVDIDVQDSENDGKPTDAAPDKPVAEIDAPKTEQNQKIKVLTTP 607
+ ID + +G A P K D KT K L+TP
Sbjct: 112 DIAVIDTSAAPPEG--GSAGPKK-----DEVKTADADAAKDLSTP 149
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 146 IKVTTQSARNVSQLSYKTPLNESLSKELRHFHTSHAVNKIVAFKLSDI 289
++ T Q ARN L YK LN ++ AVN I A+ L+ +
Sbjct: 255 LQQTFQEARNTDPLVYKWVLNFFCKSVVKQAEAEVAVNPISAYPLAKV 302
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.7 bits (61), Expect = 1.0
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 5/167 (2%)
Frame = -3
Query: 744 NTTSFESSELMFK*DNMSSLRTLPFLPVALTALKSTLN*AAILLTAGVVNTLIFWFCSVF 565
NT+S SS L SSL + L + T ++ + + LT+ + S
Sbjct: 66 NTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTT 125
Query: 564 GASISATGL--SGAASVGFPSFSESCTSISTRGCPTRAV*SISWYSRVMIPSYRLVMVTA 391
+S++++ + S AS S S + +S ++ + + S + + + + TA
Sbjct: 126 SSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTA 185
Query: 390 ALSLCTSQMLSNC---*TLSPTLTNHSLMTTSRIPSPISESLKATIL 259
A + TS L++ T S T T+ SL +T+ S S SL ++ L
Sbjct: 186 ASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSL 232
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.7 bits (61), Expect = 1.0
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Frame = -3
Query: 573 SVFGASISATGLSGAASVGFPSFSESCTSISTRGCPTRAV*SISWYSRVMIPSYRLVMVT 394
S F +SI+ SG +S PS S +SI + + + S+S S ++ +
Sbjct: 551 SDFSSSITTIS-SGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTS 609
Query: 393 AALSLCTSQMLSNC*TLSPTLTNHSLM-TTSRIPSPISESLKATI 262
+ S+ +S S+ SPT + SLM ++S I S S L ++I
Sbjct: 610 SPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSI 654
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 476 LVDIDVQDSENDGKPTDAAPDKPVAEIDAPKTEQN 580
L D+D++ ++ + + DA D+P+ + + P E N
Sbjct: 4105 LEDMDMEAADENKEEADAEKDEPMQDFEDPLEENN 4139
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -3
Query: 114 NTDLRTRIDIAMKELRTR 61
NTDLR+R+DI+ +L+ R
Sbjct: 408 NTDLRSRVDISESKLKKR 425
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.8 bits (54), Expect = 7.1
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -3
Query: 309 TSRIPSPISESLKATILLTA*LVWKCLNSLLKLSF--KGVL*DSCDTFLALCVVTLIFRH 136
T R+PS I E +TI+ + + K L +L LSF ++ + C VV+ +
Sbjct: 323 TKRVPSRIMEGFSSTIIASFSSLLKKLLTLFVLSFFVYPLVQEFCLFLACSFVVSFLLHG 382
Query: 135 RFTVLSWNTDLR 100
F + + D+R
Sbjct: 383 SFFLAVLSVDIR 394
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 472 LSYKSGLINIMVQPCYDTVVSASDGDSCLVALYFANVVELLNIITDF 332
L+Y S + N++V C +VVS+ + L ++L++ IT F
Sbjct: 1310 LAYASKIENLLVLQCAISVVSSLGHEHISCVLTQGAYIDLISCITKF 1356
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,180
Number of Sequences: 5004
Number of extensions: 60991
Number of successful extensions: 186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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