Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_P09
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.3  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   4.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   7.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   10.0 

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 692 DMLSHLNINSDDSNE 736
           D++SHLNI+S  +N+
Sbjct: 451 DVVSHLNISSTHTND 465


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 137 CRKIKVTTQSARNVSQLSYKTPLNESLSKELRH 235
           C+K  +++ S R+ S+   +T    S  ++LRH
Sbjct: 207 CKKYAISSNSLRSRSRSFQRTSSCHSRYEDLRH 239


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +2

Query: 332 KVGDNV-QQFDNICEVQSDKAAVTITSRYDGIITRLYHDIDQTALVGQPLVDIDVQDSEN 508
           KV  N  ++F ++     +  A  +T+      T+   D+    L    L D+D+  SEN
Sbjct: 482 KVTSNYHEEFQSLNNAVGEMEATNVTNILSMDNTQYNLDLSLPQLDSTELADLDISLSEN 541


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 458 ALVGQPLVDIDVQDSENDGKPTDAAPDKPVAEIDAPKTEQNQKIKVLTT 604
           AL+   LV+I + DS+   KP   AP  P      P + +  KI  + T
Sbjct: 321 ALMEYCLVNIVLGDSDTPPKP---APPPPPPSSSGPDSAKLDKIFDIAT 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,687
Number of Sequences: 438
Number of extensions: 4110
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)