Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_P07
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac... 87 3e-18
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 64 2e-11
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe... 27 2.2
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 27 2.9
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 27 2.9
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p... 26 5.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 6.8
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 26 6.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 6.8
>SPAC16C9.02c |||S-methyl-5-thioadenosine
phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 87.0 bits (206), Expect = 3e-18
Identities = 63/179 (35%), Positives = 89/179 (49%), Gaps = 9/179 (5%)
Frame = +2
Query: 257 VTPFGRP-SDVLIEGQIKRVQCVLLARHGRKHQLQPSDVNYRANIWALKQVGCTHILATT 433
+TP+G P S + I LARHG H P++V RANI ALK +G I++ +
Sbjct: 33 ITPWGYPASPISIARTTSGFLIAFLARHGVGHIYTPTEVPSRANIAALKSLGVLAIVSFS 92
Query: 434 ATGSLVEEYRPGDLVILDDFIDRT-WGRKCTFYDNTEGGPRGVCHLPMRPAYCERARAAL 610
A GSL E+ P D V+ IDRT R TF+ E G V H+ + + L
Sbjct: 93 AVGSLREDIPPEDFVLPTQIIDRTLCARPNTFF---ESG--CVAHVSFGDPFDQDLYEIL 147
Query: 611 YSAAKS--RGYSCH-----ETGTAVVIQGPXFSSRAESLVHXQWGGHLVNMTTVPEVVL 766
S + G H + T V ++GP FS+RAES ++ WG ++NM+ +PE L
Sbjct: 148 SSCGSNLKNGSKLHTKRKGDDLTVVCMEGPAFSTRAESNLYRSWGASIINMSVIPEAKL 206
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 64.1 bits (149), Expect = 2e-11
Identities = 51/157 (32%), Positives = 73/157 (46%), Gaps = 3/157 (1%)
Frame = +2
Query: 305 KRVQCVLLARHGRKHQLQPSDVNYRA-NIWALKQVGCTHILATTATGSLVEEYRPGDLVI 481
KRV ++LA GR H + + + +K +G ++ T A G L + ++ GDL+I
Sbjct: 93 KRVPTMILA--GRYHSYEGYPIEATTFPVRLMKVMGVEVMVVTNAAGGLNQGFKVGDLMI 150
Query: 482 LDDFIDRTWGRKCTFYDNTEGGPRGVCHLPMRPAYCERARAALYSAAKSRGYS--CHETG 655
L D I+ GV P+ AY R +Y AAK+ S HE G
Sbjct: 151 LKDHINFPGLAGMNPLRGPNAHEFGVRFPPLSDAYDLELRKLVYDAAKAHKVSRTIHE-G 209
Query: 656 TAVVIQGPXFSSRAESLVHXQWGGHLVNMTTVPEVVL 766
+ GP F +RAES + G V M+TVPEVV+
Sbjct: 210 CYAFVSGPCFETRAESRMLALMGADCVGMSTVPEVVV 246
>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 158 LNYSTLYTPIQELSYFS*ISNPLYYVVTFIIYLIKHRNFEN 36
LN +L T +SYF+ +++ L + IY I+ +NF+N
Sbjct: 212 LNTGSLITAKPLISYFNLLTSCLIIFPSIWIYAIEKKNFKN 252
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 27.1 bits (57), Expect = 2.9
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Frame = -1
Query: 319 ALDPFDLTLYQYVRGSPKRCDHL----LFDLILEKRRIIEARTS---DNSDLYFSYIAHI 161
+L+ +D LY+ R +P+R + LFD I+ + + + + DL+ + H+
Sbjct: 224 SLNDYDKKLYE--RAAPERNRLVESISLFDSIINSQWFMHSSIILFLNKFDLFRKKLEHV 281
Query: 160 D*TIQHYTHRYKNFPISVK*VTPYIMWLLL 71
Q Y +Y+ SVK +T YI+WL +
Sbjct: 282 P--FQDYFPQYEG-KNSVKSITRYILWLFV 308
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 27.1 bits (57), Expect = 2.9
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +2
Query: 443 SLVEEYRPGDLVILDDF 493
++V YRPGDL+++ D+
Sbjct: 210 NIVSNYRPGDLILIHDY 226
>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 264
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 602 RALSHNTPAAWAGGTRRADPPPCCRKTCTSDPKSYQ*NRPI 480
+ +HN G ++ PP CRKTC+S+ K Y P+
Sbjct: 69 QTFNHNESTTSVGHDN-SNSPPKCRKTCSSN-KVYSNEVPL 107
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +2
Query: 233 ENQIEKEVVTPFGRPSDVLIEGQIKRVQCVLLARHGRKHQLQPSDVNYRANIWALKQ 403
+++++ E+ P ++ Q+ A H R LQPS + + WAL Q
Sbjct: 1126 KDEVKAEMTQPVVNQDSHDLQDQLATTPTAPTAFHYRPGLLQPSQTSVQHCCWALSQ 1182
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 6.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 453 KNTGLEIWSYWTISLI 500
KN + IW+YW ++LI
Sbjct: 586 KNFDVRIWNYWLVALI 601
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +2
Query: 233 ENQIEKEVVTPFGRPSDVLIEGQIKRVQCVLLARHGRKHQLQPSDVNYRANIWALKQ 403
+++++ E+ P ++ Q+ A H R LQPS + + WAL Q
Sbjct: 1126 KDEVKAEMTQPVVNQDSHDLQDQLATTPTAPTAFHYRPGLLQPSQTSVQHCCWALSQ 1182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,628
Number of Sequences: 5004
Number of extensions: 67077
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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