Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_P07
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0389 + 3067808-3069121 32 0.44
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 31 1.0
09_04_0663 + 19299275-19299479,19300842-19300948,19301222-193014... 31 1.3
03_04_0135 + 17602684-17602986,17603831-17603854,17606801-17607196 30 1.8
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 29 3.1
07_03_0736 - 21079880-21080185,21080231-21080429,21080531-210807... 29 4.1
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 4.1
10_02_0049 - 4580417-4580602,4580955-4581833 28 7.1
09_06_0282 - 22017474-22017484,22017681-22018473,22018918-22019094 28 7.1
08_01_0311 - 2753062-2753232,2753340-2753381,2754490-2754667,275... 28 7.1
03_02_0093 - 5581087-5581259,5581956-5582062,5582644-5582723 28 9.4
02_05_0278 + 27404914-27404947,27405088-27405228,27405747-274057... 28 9.4
>12_01_0389 + 3067808-3069121
Length = 437
Score = 32.3 bits (70), Expect = 0.44
Identities = 24/87 (27%), Positives = 42/87 (48%)
Frame = -1
Query: 595 SLTIRRPHGQVAHAARTPLRVVVKRALPTPSPINEIVQYDQISRPVFFN*RPGGGRGEDV 416
+LT+RR H+ TP V +R+ P+P P+ E+ D + R V GGG
Sbjct: 61 NLTLRRLIHSWHHSTTTPFPV--ERSTPSPPPLREVDDDDVVERLVMEMEGGGGGSWCPP 118
Query: 415 SAADLLQCPNISSIVHIARLKLMFSAV 335
S L + +++ +AR +++ + V
Sbjct: 119 SCDLLREAAAVAAGSGVARRRMVGAGV 145
>01_05_0439 - 22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 31.1 bits (67), Expect = 1.0
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = +2
Query: 371 NYRANIWALKQVGCTHILATTATGSLVEEYRPGDLVILDDFIDRTWGRKCTFYDNTEGGP 550
++ A +W+L + C +LA A L EY P D I+ D F++N EGG
Sbjct: 1096 DWTARVWSLTRGTCDAVLACHAGPILCVEYSPSDKGIITGSSDGL----IRFWEN-EGGI 1150
Query: 551 RGVCHLPMRPA 583
R V +L + A
Sbjct: 1151 RCVKNLTLHSA 1161
>09_04_0663 +
19299275-19299479,19300842-19300948,19301222-19301413,
19301933-19302043,19302374-19302673
Length = 304
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +2
Query: 509 GRKCTFYDNTEGGPRGVCHLPMRPAYCERARAALYSAAKSRGYSCHETGT-AVVIQGPXF 685
G K T Y + CH+ A+ + ARA S A R + CH + I G F
Sbjct: 91 GNKKTRYSGLDLPEEIWCHIHSLMAFKDAARATCVSRAFHRSWQCHPNLIFCIGILGSDF 150
Query: 686 SSRAESLVHXQWGGHLVNMTTV 751
++ + +V G + +M T+
Sbjct: 151 INKFDRIVKNHSGIGIKSMKTL 172
>03_04_0135 + 17602684-17602986,17603831-17603854,17606801-17607196
Length = 240
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 502 DLGSEVHVLRQHGGGSARRVPPAHAAGV 585
D G E HVL GGGS +PP+H+A +
Sbjct: 6 DDGGEAHVLTDGGGGSG-GLPPSHSASL 32
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 580 RPHGQVAHAARTPLRVVVKRALPTPSPINEIVQ 482
RP G++A AA +P R + + P PS + E+++
Sbjct: 177 RPGGRLAQAAASPFRCLYRPPPPRPSRLRELLR 209
>07_03_0736 -
21079880-21080185,21080231-21080429,21080531-21080768,
21080888-21081098,21081181-21081320,21081400-21081537,
21086208-21087036
Length = 686
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 569 PMRPAYCERARAALYSAAKSRGYSCHETGTAVVIQG 676
P +PA+C R A S G + T TA +QG
Sbjct: 650 PSKPAFCARRNGGTGGAGASSGGTSSGTSTAASVQG 685
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/74 (32%), Positives = 32/74 (43%)
Frame = -1
Query: 583 RRPHGQVAHAARTPLRVVVKRALPTPSPINEIVQYDQISRPVFFN*RPGGGRGEDVSAAD 404
R+P A AAR P A P PSP N D S P ++ G D++A+D
Sbjct: 17 RKPVPVAAAAARRPAPSPAAAAAPAPSPSNPSAVSD--SDPSSYS---SSGEETDLTASD 71
Query: 403 LLQCPNISSIVHIA 362
ISS + +A
Sbjct: 72 PAAASVISSYLSVA 85
>10_02_0049 - 4580417-4580602,4580955-4581833
Length = 354
Score = 28.3 bits (60), Expect = 7.1
Identities = 36/110 (32%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Frame = -1
Query: 583 RRPHGQVAHAAR-TPLRVVVKRALPTPSPINEIVQYDQISRPVFFN*RPGG---GRGEDV 416
RR HG+ A R L V+ + NEI + D I R +F + GG +
Sbjct: 251 RRMHGRTAGEPRKNDLLDVMLEEGESKEDSNEINR-DAI-RGLFTDLFTGGETTSHTMEC 308
Query: 415 SAADLLQCPNISSIVHIARLKLMFSAVSCQQNALDPFDLTLYQYVRGSPK 266
+ A+LLQCPN VH LK S + +Q +D D+T Y PK
Sbjct: 309 AMAELLQCPNSMRRVH--ELK---SVIGSKQQ-MDEHDITKLPYHHTRPK 352
>09_06_0282 - 22017474-22017484,22017681-22018473,22018918-22019094
Length = 326
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 479 ILDDFIDRTWGRKCTFYDNTEGGPRGVCHL 568
I D ++ TW RK T D+ EG R C L
Sbjct: 195 ISDGWVAATWSRKITLEDSWEGDWRKDCEL 224
>08_01_0311 -
2753062-2753232,2753340-2753381,2754490-2754667,
2755021-2755118,2755964-2756098,2756280-2756444,
2756529-2756693,2757082-2757299,2758508-2758811
Length = 491
Score = 28.3 bits (60), Expect = 7.1
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = -3
Query: 590 HNTPAAWAGGTRRADPPPCCRKTCTSD--PKSYQ*NRPI*PDLQACILQLETR--WRSW 426
HN A AG RA+PP R TC +D P+S Q + DL Q+ TR W S+
Sbjct: 30 HNL-AHLAGEVGRAEPPVRLRVTCLADPHPESLQLGLQLAADLALPAPQVYTRTPWPSY 87
>03_02_0093 - 5581087-5581259,5581956-5582062,5582644-5582723
Length = 119
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 576 GRRIVRERAPHCTARPSLGGT 638
GR++V+ R H T RPS+ GT
Sbjct: 92 GRKVVKLRTRHVTKRPSVQGT 112
>02_05_0278 +
27404914-27404947,27405088-27405228,27405747-27405772,
27406036-27406071,27406296-27406976
Length = 305
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = -3
Query: 641 TSTP*TWPRCTVRRALSHNTPAAWAGGTRRADPP 540
TSTP + PRC RA S + AA A RRA P
Sbjct: 244 TSTPRSAPRCASARAASRRSSAAPA--RRRASEP 275
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,947,417
Number of Sequences: 37544
Number of extensions: 527114
Number of successful extensions: 1586
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1584
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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