Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_P05
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 50 5e-07
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 33 0.035
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 31 0.14
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 29 0.74
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 28 1.7
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 26 5.2
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4... 26 5.2
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 26 6.9
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 25 9.2
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 49.6 bits (113), Expect = 5e-07
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +1
Query: 322 LEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ-IGDWLKKMLHYNLVGGKHTRGITTVIS 498
+ ++++ F+ LP + + N K +P + +W K L +N +GGK+ RG++ + S
Sbjct: 1 MSAVDKRAKFESALPVFVDEIVNYLKTINIPDDVTEWYKNSLFHNTLGGKYNRGLSVIDS 60
Query: 499 YKTIEKPEKVTEHTLKLACKLGWCVEM 579
Y+ I + E A LGW VE+
Sbjct: 61 YE-ILLGHPLDEAAYMKAAVLGWMVEL 86
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 33.5 bits (73), Expect = 0.035
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = +1
Query: 286 NNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGG 465
N S+N T + NL+ + KK +LP +TLQ K KL G K LH +++ G
Sbjct: 254 NISSNSTVSDLNLKTL--KKRLRGVLPPSFLTLQEKKKLE---NRGVKKKTSLHKSVIEG 308
Query: 466 KHTRGI 483
+ +G+
Sbjct: 309 EKIKGV 314
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 31.5 bits (68), Expect = 0.14
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +1
Query: 340 KKMFDDLLPEVIMTLQN-KSKLSEVPQIGDWLKKMLHYNLVGGKHTRGITTVISYKTIEK 516
KK D P V+ ++ + P+ + L + N +GGK+ RG+ + S ++
Sbjct: 12 KKRLLDFFPVVLEGIREILESMQYFPEETEKLLYSIKRNTLGGKNNRGLAVLQSLTSLIN 71
Query: 517 PEKVTEHTLKLACKLGWCVEM 579
E + E + A LGW +E+
Sbjct: 72 RE-LEEAEFRDAALLGWLIEI 91
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 29.1 bits (62), Expect = 0.74
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -1
Query: 375 NYFREEIVEHF---LFINYFEIF*GCRHICAIILISDQLWPIFVCNF 244
N F ++++E+F + ++YF IF H+C+ S +W +C+F
Sbjct: 504 NSFNQKLMEYFKGFVKLDYFSIFITFLHVCSFGSNSFTVWEDRLCHF 550
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -1
Query: 399 LGFVL*CHNYFREEIVEHFLFINYFEIF*GCRHICAIILISDQLWP 262
LGF + H+Y HF+ ++ +F CR I +L S L P
Sbjct: 97 LGFCVLAHDYVNLINARHFMIEHFLSLFAFCRTILFSLLTSFLLVP 142
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = -2
Query: 341 FSLIISRFF-EAVVIFALLFLYLISCGQYLYV 249
FSL+IS FF +++I A+L L + SC YL++
Sbjct: 171 FSLVISWFFTHSIIISAVLPLAISSC-MYLWM 201
>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
Tip41|Schizosaccharomyces pombe|chr 3|||Manual
Length = 252
Score = 26.2 bits (55), Expect = 5.2
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 704 PTIYPFPWVYY 736
P IYPF W YY
Sbjct: 97 PVIYPFDWTYY 107
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 406 EVPQIGDWLKKMLHYNLVGGKHTRGI 483
E+ +I D+L+ H+ +GGK RG+
Sbjct: 278 ELEEIVDFLRDPTHFTRLGGKLPRGV 303
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 521 SGFSIVLYEITVVIPLVCLPPTK 453
+G L+E++V +PL +PP+K
Sbjct: 375 TGVEAPLFELSVSMPLTLIPPSK 397
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,289,209
Number of Sequences: 5004
Number of extensions: 70288
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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