Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_P05
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1432 - 33558895-33559023,33559215-33559286,33559405-335594... 61 1e-09
01_06_0411 + 29151647-29151790,29152974-29153039,29153398-291535... 55 7e-08
04_04_1431 - 33551127-33551300,33551362-33551433,33551508-335515... 47 2e-05
05_06_0265 - 26759960-26760088,26760315-26760386,26760457-267605... 44 1e-04
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691... 31 1.0
12_01_1116 + 11914352-11914415,11915049-11915158,11915254-119152... 29 5.4
02_03_0118 - 15451031-15451123,15451744-15451831,15451914-154519... 28 9.5
>04_04_1432 -
33558895-33559023,33559215-33559286,33559405-33559494,
33559574-33559618,33559693-33559788,33559905-33559956,
33560044-33560132,33560226-33560342,33560448-33560534,
33560646-33560761,33560854-33560878,33561816-33562121
Length = 407
Score = 60.9 bits (141), Expect = 1e-09
Identities = 29/71 (40%), Positives = 40/71 (56%)
Frame = +1
Query: 427 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKLACKLGWCVEMTLWRTSMGQ 606
W+ KM+ YN+ GGK RG++ V SY + + +V + LAC LGWCVE W +
Sbjct: 99 WVAKMMDYNVPGGKLNRGLSVVDSYMLLRQGTEVDDEDFYLACVLGWCVE---WLQASAL 155
Query: 607 HLDHVTGNRKT 639
LD +T N T
Sbjct: 156 VLDDITDNAYT 166
>01_06_0411 +
29151647-29151790,29152974-29153039,29153398-29153538,
29153638-29153724,29153968-29154084,29154177-29154265,
29154510-29154561,29154667-29154762,29154835-29154879,
29155002-29155091,29155164-29155235,29155490-29155618
Length = 375
Score = 54.8 bits (126), Expect = 7e-08
Identities = 26/68 (38%), Positives = 40/68 (58%)
Frame = +1
Query: 436 KMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKLACKLGWCVEMTLWRTSMGQHLD 615
KML YN++GGK RGI+ + S+K ++ + + + LAC LGWC+E W + LD
Sbjct: 70 KMLDYNVLGGKCNRGISVIDSFKMLKGTDVLNKEETFLACTLGWCIE---WLQAYFLVLD 126
Query: 616 HVTGNRKT 639
+ N +T
Sbjct: 127 DIMDNSQT 134
>04_04_1431 -
33551127-33551300,33551362-33551433,33551508-33551597,
33551671-33551715,33551785-33551880,33552245-33552296,
33552412-33552500,33552590-33552887,33553007-33553109,
33553328-33553352,33553503-33553763
Length = 434
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +1
Query: 427 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKLACKLG 564
WL +M+ YN+ GGK RG++ + SY +++ +VTE LAC LG
Sbjct: 84 WLAQMIDYNVPGGKLNRGLSVIDSYLLLKQGSEVTEDDFFLACVLG 129
>05_06_0265 -
26759960-26760088,26760315-26760386,26760457-26760546,
26760649-26760693,26760785-26760880,26760980-26761031,
26761209-26761297,26761388-26761504,26761680-26761737,
26761834-26761936,26762027-26762051,26762677-26762826
Length = 341
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +1
Query: 427 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKLACKLGWCVEMT 582
W+ +ML YN+ GGK RG++ V SYK ++ +++ + LA LG C ++T
Sbjct: 47 WIDRMLDYNVPGGKCNRGLSVVDSYKLLKGTNVLSQEDMFLASTLG-CFKLT 97
>10_08_1052 -
22567937-22568329,22568436-22568669,22568787-22569111,
22569239-22569484,22569576-22569916,22570070-22570150,
22570275-22570394,22570549-22570650,22570900-22571035,
22571210-22571362,22572605-22572906
Length = 810
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 344 FFSLIISRFFEAVVIFALLFLYLI 273
FFSL I +F ++ +FAL+F Y+I
Sbjct: 362 FFSLSIRKFLISIAVFALVFFYMI 385
>12_01_1116 +
11914352-11914415,11915049-11915158,11915254-11915295,
11916263-11916430,11916506-11916682,11916848-11917051,
11917125-11917319
Length = 319
Score = 28.7 bits (61), Expect = 5.4
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +1
Query: 346 MFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGGKHTRGITTVIS-YKTIEKPE 522
MFD+++ EV+ L+N + VPQ L K + + ++G+ +++ Y KPE
Sbjct: 133 MFDEIVMEVMWGLKNLMHVL-VPQEKMKLSKDDYLPM-----SQGLYMLLNRYGLDVKPE 186
Query: 523 KVTEHTLKLACKLGWC 570
VT+ +KLAC L C
Sbjct: 187 MVTDSIIKLACFLLDC 202
>02_03_0118 -
15451031-15451123,15451744-15451831,15451914-15451985,
15452896-15453018,15453541-15453629
Length = 154
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 190 RLHDIVDMSVFNFLKITRKVTYKYWPQLIRY 282
R + I+D+ + N++K+T K+ Y Y +L Y
Sbjct: 71 RTNLIIDLKIQNYVKLTYKLHYSYIEKLSMY 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,181,495
Number of Sequences: 37544
Number of extensions: 403940
Number of successful extensions: 825
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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