Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_P05
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    27   0.26 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.7  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +1

Query: 427 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKLACKLGWCVEMT 582
           W+   +H      +   GITTV++  TI    +     ++ A  L W + M+
Sbjct: 263 WVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMS 314


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/34 (20%), Positives = 18/34 (52%)
 Frame = -2

Query: 569 HHPSLQANFKVCSVTFSGFSIVLYEITVVIPLVC 468
           H+P+ + N  VC+       ++ +   +++ +VC
Sbjct: 797 HYPTREDNLLVCNSYVDASYMIAFAYPIMLIVVC 830


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 427 WLKKMLHYNLVGGKHTRGITTVISYKTI 510
           W+   +++     +   GITTV++  TI
Sbjct: 260 WVSFWINHEATSARVALGITTVLTMTTI 287


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 696 CGLVFYNSVVTIQSK*RIVCFSI 628
           CGL F + +++ Q    I+C +I
Sbjct: 655 CGLRFEDPMISFQPGDTIICINI 677


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,621
Number of Sequences: 438
Number of extensions: 5200
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)