Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_P03
         (646 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       27   0.17 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   3.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.6  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   8.7  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 382 ESRDGGAVHGSYSLVE-PDGSVRKVDYTAD 468
           E    G + G Y +V   DGS+R V YTAD
Sbjct: 209 ERTSDGFIVGEYGVVSHDDGSLRGVRYTAD 238


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 409 GSYSLVEPDGSVRKVDYTADDHHGFNA 489
           GSY    P+G + + D +    +G++A
Sbjct: 142 GSYDPYSPNGKIGREDLSPSSLNGYSA 168


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 304 DTYAHPKYDYAYSVADPHTGDHKSQHESRDGGAVHGSY 417
           D +A     YA++  DPH  +  S  +  D   + G Y
Sbjct: 200 DPFACTHVIYAFATIDPHNFNMISNDDESD--IIQGGY 235


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 2   GRPMISHCSVYLVQNVHQSVRP 67
           GRP+ +H  + +V+     +RP
Sbjct: 52  GRPLPNHIRLKIVEMAANGIRP 73


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,355
Number of Sequences: 336
Number of extensions: 2905
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)