Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_P03
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.5  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   3.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 361 RCGGQPRSKHSRIWGEHRCRGHGRSQEK 278
           R G  P+ + +RI    +   H RSQEK
Sbjct: 139 RFGRVPKREKARILAAMQQSSHSRSQEK 166


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 409 GSYSLVEPDGSVRKVDYTADDHHGF 483
           GS S   PDG    + Y AD+ +GF
Sbjct: 73  GSDSYTAPDGQQVSITYVADE-NGF 96


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 319 GEHRCRGHGRSQEKPRGRWGQRG 251
           G  + RGHG+     RGR G RG
Sbjct: 79  GRGKGRGHGKGGS--RGRGGNRG 99


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 74  RVGCRQRWSPAIPPRCGSFVP 136
           R GC   W   +PP  GS  P
Sbjct: 380 RNGCPADWLWIVPPISGSATP 400


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,914
Number of Sequences: 438
Number of extensions: 3895
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)