Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_O24
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 27 2.3
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 27 2.3
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 3.1
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 27 3.1
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 4.1
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 26 4.1
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 5.4
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 7.1
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 7.1
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 7.1
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 7.1
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 7.1
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 25 7.1
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 7.1
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 7.1
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 25 9.4
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 9.4
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 25 9.4
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 25 9.4
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +1
Query: 211 SAEDVATEKTQ--KSLF-DGIEKFDSSXLKHTETQEKNPLPDKDAIEAEKE 354
++EDVA+++T+ K++F DG+ K ++ T ++K D+DA A E
Sbjct: 22 ASEDVASKQTEEAKAVFGDGVAKQENKSGASTNDEKKPAEGDEDAEPASPE 72
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 316 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPL 435
P D D I+ +E F NG+ +FD +K+ T K+P+
Sbjct: 159 PTCDSD-IDLIREYFSFENGVCSFDNMTVKYVSTSSKSPV 197
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 340 EAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPXKDVIEQEKSA*TTT 483
E EKE K ENF+ + + E E+ L +EQEK+A + T
Sbjct: 445 EMEKELQKIR---ENFEEERRRAIEVAEQRQLIVNHELEQEKNAPSPT 489
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +1
Query: 142 SQLEGFNTSCLR-DVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSXLKHTETQEK-N 315
S ++ F + L + + +K V+ + E ++ LF ++ +++ T+E N
Sbjct: 400 SYIQSFQNAILEGEREDVDKKVVEFLNPLVLELQERLLFVVQTAIETDIQRYSPTEEDLN 459
Query: 316 PLPDKDAIEAEKEKNKFLNGIENFDP 393
P+ D ++ + EK + N E DP
Sbjct: 460 PIADDKSLLFDLEKLRLNNDEEKLDP 485
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = +1
Query: 265 EKFDSSXLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPXK 444
+ FD +K +EK L + AE EK++ N +E+ + + N K
Sbjct: 74 KSFDEELVKFHNLEEKLQLTETKCRNAESEKSRVENELEDLTSSLFEEANRMVAN--ARK 131
Query: 445 DVIEQEK 465
+ + EK
Sbjct: 132 ETVASEK 138
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +1
Query: 289 KHTETQEKNPLPDKDAIEAEKEKNKFL----NGIENFDPTKLKHTETCEKNPLPXKDVIE 456
+H E+ E P+ ++ + EKEK+ + +E+ P H T +K+P+ +
Sbjct: 801 RHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQQKSPVEKPKKLR 860
Query: 457 QEKSA 471
+++ A
Sbjct: 861 KDRYA 865
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 240 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 136
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 349 KEKNKFLNGIENFDPTKLKHTETCEKN 429
K + K L G ++ DP L+ + CE+N
Sbjct: 307 KMQEKELEGSDSIDPILLEKIDVCEEN 333
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 242 WVFSVATSSADGSTIFSLVSTSRRQL 165
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 242 WVFSVATSSADGSTIFSLVSTSRRQL 165
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 242 WVFSVATSSADGSTIFSLVSTSRRQL 165
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 242 WVFSVATSSADGSTIFSLVSTSRRQL 165
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 170 VSVTSTPMKRLCFRLLKTSPLRRPRSLYSTALR 268
V +T +P + CFRL + PLR + A R
Sbjct: 134 VDITLSPGEEKCFRLKRRIPLRTAPTYKGLAFR 166
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 245 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 147
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 25.4 bits (53), Expect = 7.1
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Frame = +1
Query: 133 DLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGI----EKFDSSXLKHTE 300
+L+S L+ SCL+D T+ K ++ +EKTQ+ +FD + +KF +S + +
Sbjct: 24 ELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKRTEKKFHTSLNRFGK 77
Query: 301 TQEK 312
T EK
Sbjct: 78 TLEK 81
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 639 IRGCCTPPLPRQGCHCTK 586
+R C + P PRQG C K
Sbjct: 70 VRDCPSSPNPRQGAECYK 87
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +1
Query: 199 IVLPSAEDVATEKTQKSLFDGIEKFDSSXLKHTETQEKNPLPD 327
+ L S ED+ + T+ S+ + + ++HT + K +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = +1
Query: 211 SAEDVATEKTQKSLFDGIEKFDSSXLKHTETQEKNPLPDKDAIEAEKEK 357
S++ AT+ + + + +DSS ++ K P+ + E+E E+
Sbjct: 112 SSKKKATDSVSDKIDESVASYDSSTHLRRSSRSKKPVNYNSSSESESEE 160
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 241 QKSLFDGIEKFDSSXLKHTETQEKNPLPD 327
Q + G + DSS +K T +E PLP+
Sbjct: 3 QTAALHGPKPMDSSHIKVTNVKELKPLPE 31
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,426,784
Number of Sequences: 5004
Number of extensions: 46621
Number of successful extensions: 162
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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