Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_O24
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 1.4
07_03_0735 + 21075033-21075846,21077065-21077199,21077384-210775... 29 2.4
04_04_1503 + 34031540-34031562,34031682-34032212,34032417-340325... 29 2.4
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 29 3.2
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539 29 4.2
02_04_0050 - 19245087-19245113,19245306-19245449,19245546-192456... 29 4.2
06_03_0355 + 19822110-19824491 28 5.6
03_02_0908 - 12308192-12308431,12309481-12309693 28 7.4
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089... 27 9.7
07_03_0734 + 21067747-21068569,21069678-21069812,21069967-210701... 27 9.7
07_03_0732 + 21050941-21051811,21053676-21053720,21053931-210539... 27 9.7
06_01_0422 + 3034556-3034777,3034859-3035138,3036398-3036483,303... 27 9.7
03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378... 27 9.7
02_05_0599 - 30251708-30251815,30251864-30251984,30252068-302522... 27 9.7
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 112 TSPRFATDLKSQLEGFNTSCLRDVDTNEKIVL 207
T+ DL+S+L+ NT CL + + N+K+++
Sbjct: 47 TNSSAVKDLQSKLDAVNTECLAEKEKNKKLII 78
>07_03_0735 +
21075033-21075846,21077065-21077199,21077384-21077517,
21077604-21077814,21078033-21078270,21078346-21078496,
21078593-21078931
Length = 673
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 196 KIVLPSAEDVATEKTQKSLFDGIEKFDSSXLKHTETQEKN 315
K VLPS E++A ++ S GIE+ + + + Q+KN
Sbjct: 361 KGVLPSGEEIAVKRLSMSSGQGIEELKNELVLVAKLQQKN 400
>04_04_1503 +
34031540-34031562,34031682-34032212,34032417-34032571,
34032929-34033020,34033916-34034419
Length = 434
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 9 RQRSLSARIFYPLPHQKYIDSQXPAP*VTLPPCXDLPKV---RHRPEESARRLQHQLS 173
R+R + AR+FY +PH I + T+P L K+ RHR E R +S
Sbjct: 124 RERRIKARVFYLVPHLTEISYFVRSHLKTMPREEALKKIMLDRHRSEACERAKMESIS 181
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2
Query: 140 RVSSKASTPAVSVTSTPMKRLCFR 211
+VSS++S+P SVT+ ++ +CFR
Sbjct: 72 QVSSQSSSPVESVTTATLRPICFR 95
>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
Length = 585
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 279 EPXEAHRDSGEEPASGQRRYRSGEGKEQ 362
+P A D E +G RR+RSG G++Q
Sbjct: 206 DPRAADDDHAEAARNGVRRWRSGSGQQQ 233
>02_04_0050 -
19245087-19245113,19245306-19245449,19245546-19245637,
19245733-19245811,19245902-19245968,19246084-19246175,
19246267-19246383,19246472-19246583,19246884-19246990,
19247113-19247189,19247351-19247432,19247526-19247663,
19248176-19248234,19249155-19249233
Length = 423
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/74 (28%), Positives = 34/74 (45%)
Frame = -3
Query: 393 GIEVLDAVQEFVLFLLRFDSVFVRKRVLLLSLGVLQXARIKLLNAVE*RLLGLLSGDVFS 214
G+ + D V F LF++ KRV L+ + +L A++ LGL+ F
Sbjct: 68 GVTIADFVMPFFLFMVGISLTLAYKRV----PDKLEATKKAVLRALKLFCLGLVLQGGFF 123
Query: 213 RRKHNLFIGVDVTE 172
+L GVD+T+
Sbjct: 124 HGVRSLTFGVDITK 137
>06_03_0355 + 19822110-19824491
Length = 793
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +1
Query: 172 LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSXLKHTET---QEKNPLPDKDAIE 342
+ +V +++LP+ E+VATE + +E D+ L T +E +P+ D E
Sbjct: 203 VEEVSVTHEVMLPNYEEVATEGDGDTAMAAVEN-DAGSLAETVVMTHEEFVAVPEDDEEE 261
Query: 343 AEKEKNKFLNGI 378
A+ ++ G+
Sbjct: 262 ADGDEENDATGL 273
>03_02_0908 - 12308192-12308431,12309481-12309693
Length = 150
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +1
Query: 223 VATEKTQKSLFDGIE-----KFDSSXLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENF 387
V T++ K L+D + K +S + + ++++PL + ++N+F+NGI F
Sbjct: 72 VHTKRRNKLLYDRMRDIVFVKLNSKLINKRDNKDRDPLEKEVNDAVSNDENEFINGIVPF 131
>10_08_0190 +
15607241-15607409,15607932-15607990,15608883-15608991,
15609394-15609551,15609976-15610044,15610158-15610847,
15611112-15611629,15611725-15611789,15613010-15613089,
15613894-15613998,15614768-15614881,15615029-15615168,
15615257-15615385,15615903-15616055,15616186-15616327
Length = 899
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -1
Query: 263 MPSNKDFWVFSVATSSADGSTIFSLVSTSRRQLVL 159
+PSN+ + ++ TSS++GS FSL +++ + L
Sbjct: 500 LPSNESWDYYASRTSSSNGSVYFSLQNSTNSDMDL 534
>07_03_0734 +
21067747-21068569,21069678-21069812,21069967-21070100,
21070182-21070449,21070472-21070709,21070787-21070937,
21071040-21071387
Length = 698
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 196 KIVLPSAEDVATEKTQKSLFDGIEKFDSSXLKHTETQEKN 315
K VLP+ E++A ++ S GIE+ + + + Q KN
Sbjct: 364 KGVLPNGEEIAVKRLSMSSGQGIEELKNELVLVAKLQHKN 403
>07_03_0732 +
21050941-21051811,21053676-21053720,21053931-21053942,
21054056-21054067,21054429-21054554,21054727-21054857,
21054939-21055149,21055237-21055474,21055557-21055707,
21055810-21055895,21055928-21055976
Length = 643
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 196 KIVLPSAEDVATEKTQKSLFDGIEKFDSSXLKHTETQEKN 315
K VLPS +++A ++ +S GIE+ + + + Q KN
Sbjct: 399 KGVLPSDQEIAVKRLSQSSRQGIEELKNELVLVAKLQHKN 438
>06_01_0422 +
3034556-3034777,3034859-3035138,3036398-3036483,
3036614-3036837,3036911-3036971,3037634-3037828,
3037981-3038205
Length = 430
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +1
Query: 226 ATEKTQKSLFDGIEKFDSSXLKHTET-QEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKL 402
A ++SL + K + L E+ E+ +K+A + +EK K L + + +
Sbjct: 123 AIRALKQSLDEHYHKGTEAILDEAESAMEEMEELEKEAAKHHREKGKELLSKKKYKEAAI 182
Query: 403 KHTETCEKNPLPXKDVIEQEK 465
+ T+ ++NPL ++ ++ K
Sbjct: 183 QFTKAIKRNPLNPRNFSDRAK 203
>03_04_0013 +
16436438-16436536,16437257-16437742,16437791-16437826,
16437835-16438323,16438951-16439622
Length = 593
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 316 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKH 408
P ++ E EKEK K +N + P KLKH
Sbjct: 489 PFTEEKLQELEKEKEKKINDMAKGWPEKLKH 519
>02_05_0599 -
30251708-30251815,30251864-30251984,30252068-30252215,
30252303-30252480,30252587-30252625,30252704-30252799,
30252879-30253030,30253336-30253722,30253836-30253940,
30254083-30254098
Length = 449
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 306 GEEPASGQRRYRSGEGKEQIPERHRELR--SH*AEAHG-NVRKEPAP 437
GEEPA R+G G P +HRE + SH + +G +R+ P
Sbjct: 6 GEEPAHDFLSLRAGGGSSSPPFQHREEQHSSHSSRGYGMEIRRSLRP 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,458,409
Number of Sequences: 37544
Number of extensions: 340202
Number of successful extensions: 1055
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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