Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_O21
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit Tim9|Schizosaccha...    61   1e-10
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    33   0.038
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    32   0.066
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   3.3  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    26   4.3  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   4.3  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   7.5  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    25   7.5  
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||...    25   10.0 

>SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit
           Tim9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 84

 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 23/50 (46%), Positives = 35/50 (70%)
 Frame = +2

Query: 194 YNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRFHEF 343
           Y+ L++ CF+DC+ DFTS  L + E +C   C +K+L+ ++RV QRF EF
Sbjct: 28  YSTLTQNCFSDCVQDFTSSKLSNKESECIAKCADKFLKHSERVGQRFAEF 77


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 32.7 bits (71), Expect = 0.038
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 197 NKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRF 334
           +K++E CF+ CI +  S T    E  C   CME+Y+     VS+ +
Sbjct: 39  SKINENCFDKCIPEPGS-TFDPNEKSCVSKCMERYMDAWNIVSRTY 83


>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 31.9 bits (69), Expect = 0.066
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = +2

Query: 197 NKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRF 334
           ++ +  C+  CI +  ++  KS E++C  NC+E++L  N  + +R+
Sbjct: 38  HQFTSTCWPKCIGNIGNKLDKS-EEQCLQNCVERFLDCNFHIIKRY 82


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 338 EFQMLANENMLALAQKSGNPS*KVWYICDLSSHFL*GVVRESTPYIMIYLCKCTV 502
           EF  LA+  +  L Q   +P+   +Y    S  FL         YI+I LCKC +
Sbjct: 687 EFYDLASREITLLQQSDNHPNIVRYYCKQKSDQFL---------YIVIELCKCNL 732


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 197 NKLSELCFNDCIHDFTSRTLKSTEDKCTV 283
           NK++ LCF D I D +  ++K T  KC +
Sbjct: 81  NKIASLCFEDVI-DTSHVSIKLTLPKCVL 108


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 311 NQRVSQRFHEFQMLANENMLALAQ 382
           N RVS+R HEFQ    + + +L Q
Sbjct: 189 NLRVSKRVHEFQEFFGDGITSLTQ 212


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 532 QNFIDNNLDIHCTFAQVYHYIG 467
           Q F+++    +CTF Q+Y+ IG
Sbjct: 191 QEFVESCHGQYCTFQQIYNNIG 212


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 180 ILESFNLI-NFTHHXQGSPFLYIFKKSLEQ 94
           +L +F L   F  H + SPFL+IF  S ++
Sbjct: 569 LLPNFTLYPQFIFHLRRSPFLHIFNNSPDE 598


>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 77  NTKQSHCSKLFLKIYRNGD 133
           NT  +HC+KLF  I R+ D
Sbjct: 3   NTLYNHCTKLFQSIQRSLD 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,212
Number of Sequences: 5004
Number of extensions: 39313
Number of successful extensions: 100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)