Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_O20
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...   121   5e-29
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    28   0.60 
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    26   2.4  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    25   5.6  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   7.3  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    24   9.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   9.7  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    24   9.7  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score =  121 bits (292), Expect = 5e-29
 Identities = 56/106 (52%), Positives = 69/106 (65%), Gaps = 2/106 (1%)
 Frame = +3

Query: 57  MVNVPKQRRTYXXXXXXXXXXXX--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 230
           MVN+PK R+TY              +QYKK  +   AQG+RRYDRKQ G+GGQ+KP+F  
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHK 60

Query: 231 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 368
                  +VLRLEC  CK ++Q+ LKRCKHFELGG+KK KG  IQF
Sbjct: 61  KAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 166 PWAACLSLDFLYCDTLCTLWHL 101
           P A  + L +LY DTL + WHL
Sbjct: 679 PLAVAILLHYLYTDTLLSPWHL 700


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -2

Query: 247 LVVFAFFLKMGLD*PP*PCCLRS*RLLPWAACLSLDFLYCDTLCTLWHLHFLQYVLRCFG 68
           L+VF FF+  G         LR  R+L      S+ F +   L TL+H   + + + C G
Sbjct: 40  LLVFGFFMIAGFS-KSVSFFLRKDRMLG-----SISF-FSGLLLTLFHFPIIGFFVECLG 92

Query: 67  TFTIFE 50
            F +F+
Sbjct: 93  FFNLFK 98


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 94  KNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLS 270
           K  +A K  R H+  +     +  V        ++ V SPNP S +R+K  R+  S+ S
Sbjct: 241 KEQHAKKPKRKHTRSTVPTSNVEPVSQPQPSPDKI-VSSPNPPSAKREKKKRRKSSMSS 298


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 130 STKSPRKGTLPRVEDVMIVNSRVTVVSPN 216
           ST+ PR  T    E V +++ R+ V++PN
Sbjct: 191 STEQPRMHTFSLSELVPLLSERLYVINPN 219


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 14  LFLTFVDIVPNXLKN 58
           LF TFVD +P+ LKN
Sbjct: 463 LFNTFVDQIPSYLKN 477


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 142 PRKGTLPRVEDVMIVNSRVTVVSPNPSS 225
           P+K + P+V  +M      +VV+P+P+S
Sbjct: 620 PQKPSAPQVTRLMAPQDSSSVVTPSPTS 647


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 94  LQYVLRCFGTFTIFEXVRHDINKRQKKH 11
           L YV+     F +F  ++ D+ K  K+H
Sbjct: 21  LAYVVNFLVCFVLFTNIKLDVRKMAKRH 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,576,371
Number of Sequences: 5004
Number of extensions: 29408
Number of successful extensions: 103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)