Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_O20
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...   126   8e-30
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...   126   8e-30
Z83125-4|CAB05616.1|  376|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z83319-2|CAB05904.2|  433|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    27   8.7  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    27   8.7  
L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score =  126 bits (304), Expect = 8e-30
 Identities = 60/105 (57%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
 Frame = +3

Query: 57  MVNVPKQRRTYXXXXXXXXXXXX-SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 233
           MVNVPK RRT+             +QYKK KE   AQGRRRYDRKQ G+GGQ+KPIF   
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60

Query: 234 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 368
                 IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 61  AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score =  126 bits (304), Expect = 8e-30
 Identities = 60/105 (57%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
 Frame = +3

Query: 57  MVNVPKQRRTYXXXXXXXXXXXX-SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 233
           MVNVPK RRT+             +QYKK KE   AQGRRRYDRKQ G+GGQ+KPIF   
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60

Query: 234 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 368
                 IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 61  AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105


>Z83125-4|CAB05616.1|  376|Caenorhabditis elegans Hypothetical
           protein T15D6.5 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +1

Query: 67  YQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPL 246
           Y  +AGRT    +  + +     KS R   LP++++       + +V+  P S  R+K L
Sbjct: 86  YSTTAGRTRDFGSRFRVSFADIQKSQRWLHLPKIKNPTWNRDILMIVASRPGSVSRRKVL 145

Query: 247 RK 252
           RK
Sbjct: 146 RK 147


>Z83319-2|CAB05904.2|  433|Caenorhabditis elegans Hypothetical
           protein T02D1.6 protein.
          Length = 433

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 207 DHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCAVLV 67
           +H    V+  NV+ P Q   P     V+  VLC I   C  S  + +
Sbjct: 38  NHTGGPVWVRNVYPPIQELQPKVLIVVVVFVLCFIVGVCGNSSIITI 84


>Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical
           protein F10C2.4 protein.
          Length = 1081

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 121 RYHSTKSPRKGTLPRV-EDVMIVNSR 195
           +Y +TKS R+G LP + ED++    R
Sbjct: 612 QYFATKSKRRGLLPEILEDILAARKR 637


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
           protein F52C9.1a protein.
          Length = 1336

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 145 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 50
           ++ + C+T   L    FL +V  C+GT T  +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
           protein F52C9.1b protein.
          Length = 1331

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 145 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 50
           ++ + C+T   L    FL +V  C+GT T  +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767


>L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical
           protein F44E2.3 protein.
          Length = 244

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 258 LRLECADCKVRSQVALKRCKHFELGGDKK 344
           + +E A+CK R + + K+CK  E   ++K
Sbjct: 152 MAVELAECKKRDEESRKKCKQLEAELERK 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,068,709
Number of Sequences: 27780
Number of extensions: 178438
Number of successful extensions: 586
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)