Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_O14
         (842 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical pr...   123   1e-28
Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical pr...    87   2e-17
U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AC084154-7|AAO91685.1|  304|Caenorhabditis elegans F-box a prote...    30   2.4  
AC024857-2|AAK31567.2|  463|Caenorhabditis elegans Hypothetical ...    29   5.5  
AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical ...    28   7.2  
U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical
           protein W01A11.1 protein.
          Length = 452

 Score =  123 bits (297), Expect = 1e-28
 Identities = 57/123 (46%), Positives = 82/123 (66%), Gaps = 4/123 (3%)
 Frame = +1

Query: 484 GLNIHFMRITPKVPKGVEIV-PLLLLHGWPGSVREFYEAIPHLTAVSK---DRNFALEII 651
           GL +HF+ + P  PK  + V P+L+ HGWPG+V EFY+ IP LT   K   D +FA E+I
Sbjct: 125 GLQVHFLHVKP--PKSYKNVKPILVAHGWPGNVFEFYKFIPLLTDPKKHGIDSDFAFEVI 182

Query: 652 APSLPGYGFSDAAVRPGLAAAEVAVIFKNLMARLGYKQYYVQGGDWGALIGXAMATFFPK 831
           APS+PGYG+SD   + G +    A +F+ LM RLGY ++Y+QGGDWGA+I   +   +P+
Sbjct: 183 APSIPGYGWSDQPKKTGFSQLACARVFRKLMLRLGYNKFYLQGGDWGAIITSLLTKVYPQ 242

Query: 832 EII 840
            ++
Sbjct: 243 NVM 245



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
 Frame = +3

Query: 237 KQKQD-TSIKPFEITFSETMVKELKERIKKRRPFAPPLEGVG-FKYGFNSKQLDSWLKYW 410
           K K D T IKPF++   ++++ +LK R++  R     LE    F YGFNSKQL     YW
Sbjct: 41  KAKPDNTEIKPFKVNVEQSVIDDLKHRLQNARISHSVLEDSDDFYYGFNSKQLLKLRDYW 100

Query: 411 AEEYPFAERQKFLNQYPHFKTNIQGFE-YSLH 503
             +Y + +++  +NQ+P FKT I+G + + LH
Sbjct: 101 LNKYDWRKQEATINQFPQFKTEIEGLQVHFLH 132


>Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical
           protein C45B11.6 protein.
          Length = 457

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 48/127 (37%), Positives = 70/127 (55%), Gaps = 9/127 (7%)
 Frame = +1

Query: 484 GLNIHFMRI-TPKVPKGVEIVPLLLLHGWPGSVREFYEAIPHLTAVSK-------DRNFA 639
           GL IHF+R+ TP   K   +VPLL+ HG+PGS  +F++ IP LT  S+       +    
Sbjct: 119 GLKIHFLRVSTPPKDKKSRVVPLLIFHGFPGSFWDFFKIIPILTNPSRHGFDFGVEEAIQ 178

Query: 640 LEIIAPSLPGYGFSDAAVRPGLAAAEVAVIFKNLMARLGYKQYYVQGGD-WGALIGXAMA 816
            E+I PSLPG+ FSD   + G  A   A I   LM RL    Y+V G + +G+ +   ++
Sbjct: 179 FEVIVPSLPGFIFSDKPTKQGFNAIATARIIAKLMYRLNLNNYFVHGTEGYGSDVATLLS 238

Query: 817 TFFPKEI 837
           + +P  I
Sbjct: 239 SLYPTRI 245



 Score = 37.5 bits (83), Expect = 0.012
 Identities = 25/94 (26%), Positives = 43/94 (45%)
 Frame = +3

Query: 210 EEWWGPPELKQKQDTSIKPFEITFSETMVKELKERIKKRRPFAPPLEGVGFKYGFNSKQL 389
           +++W   +  +K D +I  F I   E+ V   KE+++  R F P L    +    N    
Sbjct: 36  DDYWKLDD-PEKDDDTIYSFTIDIKESEVSNFKEKLESER-FLPTLYDTNYDNYLNE--- 90

Query: 390 DSWLKYWAEEYPFAERQKFLNQYPHFKTNIQGFE 491
              LK     + + + Q FLN +  +KT I+G +
Sbjct: 91  ---LKQVLLGFNWKQHQHFLNTFKQYKTEIEGLK 121


>U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical
           protein K02F3.6 protein.
          Length = 404

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
 Frame = +1

Query: 520 VPKGVEIVPLLL-LHGWPGSVREFYEAIPHLTAVSKDRNFALEIIAPSLPGYGFSDAAVR 696
           V  G +  PL+L +HG+P    EF+ +         D+      +A    GY  SD    
Sbjct: 132 VQTGSDDKPLMLFIHGYP----EFWYSWRFQLKEFADK---YRCVAIDQRGYNLSDKPKH 184

Query: 697 -PGLAAAEVAVIFKNLMARLGYKQYYVQGGDWGALIGXAMATFFPKEI 837
               +  E+    ++++  LGY +  V   DWG L+    A  +P+ +
Sbjct: 185 VDNYSIDELTGDIRDVIEGLGYDKAIVVAHDWGGLVAWQFAEQYPEMV 232


>AC084154-7|AAO91685.1|  304|Caenorhabditis elegans F-box a protein
           protein 74 protein.
          Length = 304

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 342 PLEGVGFKYGFNSKQLDSWLKYWAEEYPFAERQKFLNQYPHFK 470
           P EG G +  F  +Q      ++ E Y F   +  +NQ+ HFK
Sbjct: 175 PTEGDGIEDLFQLEQFQKSRDFYMESYAFDTTKTSINQFFHFK 217


>AC024857-2|AAK31567.2|  463|Caenorhabditis elegans Hypothetical
           protein Y71G12A.4 protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 643 EIIAPSLPGYGFSDAAVRPGLAAAEVAVIFKNLMARLGYKQ 765
           +++    PGYG S+         A V  + K  M  LGY Q
Sbjct: 245 DLLIYDYPGYGVSEGTTNEKNVYAAVEAVMKYAMGTLGYSQ 285


>AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical
           protein K06A5.4 protein.
          Length = 877

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 172 TRRYNGMDASTSSGKTISRRRDSLMHXXGHTD 77
           ++RY G DAS+SSG+++    +   H   + D
Sbjct: 437 SKRYRGRDASSSSGRSVRFEEEHRRHGDEYRD 468


>U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical
           protein K09C4.10 protein.
          Length = 1035

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +3

Query: 348 EGVGFKYGFNSKQLDSWLKYWAEEYPFAERQKFLNQYPHFKTNI 479
           +GV     + ++ ++  +  W+E  P A+  KF N+  H++T +
Sbjct: 303 QGVKALERYETENMNEEVTDWSEPKPLAKFYKFFNKTLHYETTV 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,559,007
Number of Sequences: 27780
Number of extensions: 382752
Number of successful extensions: 916
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)