Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_O08
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    27   2.0  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    27   2.6  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    27   2.6  
SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr...    26   6.1  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.1  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   8.1  

>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 605 VLALFVFTLLISNNSERFTAPDKTRLTRLI 516
           +LALFV +LLIS   ER T    T  +  I
Sbjct: 319 ILALFVVSLLISGRDERLTTLSATAASPFI 348


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 345 MTRSKMRCGLSTRSIHPH 292
           + +S +RCG +T S HPH
Sbjct: 34  LNKSALRCGQATDSTHPH 51


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 331 NEVRPLYAIDSSALRDVNKSHIRYLLNYDNEIASTTDNFIL 209
           +E   L A+D+  L D N +H+ YL+ Y     + TD  IL
Sbjct: 205 DEKETLAALDNVKLSDENAAHLGYLVKY---FQNYTDKIIL 242


>SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 171

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +1

Query: 103 EFDANKRTFQVFYRTFDRILSVTLWEVITLK*LVITK*NYQLYLQFR 243
           E++      ++F  TF R+LS+ LW        ++T+  ++ Y+QF+
Sbjct: 85  EWEKQSANVKIFQDTFKRVLSLFLW--------ILTR-GFRFYIQFK 122


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 64  DLINYLLANFIVTEFDANKRTFQVFYRTFDRILSVTLWE 180
           D+++ L    ++ E D N +TFQ FY     ILS  L+E
Sbjct: 638 DVLDELQKFDLLPENDDNFQTFQAFYGGPPIILSPNLYE 676


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -3

Query: 508 TVTYSVINRTTYNTSDY 458
           T+TY +I+RT+Y+ + Y
Sbjct: 235 TITYQIISRTSYSLNKY 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,554
Number of Sequences: 5004
Number of extensions: 50599
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)