Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_O08
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    27   0.23 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.9  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   5.0  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   5.0  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   5.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.7  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 514 TLTVTYSVINRTTYNTSDYYCRQCASGKSLII 419
           TL     V+  T YN  DY  RQ A G +  I
Sbjct: 228 TLIKISDVLEETFYNNGDYIIRQGARGDTFFI 259


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 523 RVSRVLSGAVKRSELFEINKVNTNNARTMASKGLTVEN 636
           R S ++ G  KRS++F     N  N+  + +    +EN
Sbjct: 349 RDSSIICGGNKRSQVFRGRDANRQNSCNIYNASSRMEN 386


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 19  LHNLHKTRI*NEVTFDLINYLLANFIVTEFDANKR 123
           L N  +  + N+  FD +N+ + N  V E   N R
Sbjct: 381 LSNKMQKMVNNDFNFDDVNFRIMNANVNELILNTR 415


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 19  LHNLHKTRI*NEVTFDLINYLLANFIVTEFDANKR 123
           L N  +  + N+  FD +N+ + N  V E   N R
Sbjct: 381 LSNKMQKMVNNDFNFDDVNFRIMNANVNELILNTR 415


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 19  LHNLHKTRI*NEVTFDLINYLLANFIVTEFDANKR 123
           L N  +  + N+  FD +N+ + N  V E   N R
Sbjct: 381 LSNKMQKMVNNDFNFDDVNFRIMNANVNELILNTR 415


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +1

Query: 265 EYEIYLRLSVRMNRSRREAA---PHFTPSHFQSSMFACT*KIRLFRVTRGIFFYELSVIY 435
           E E   RL   + R    A+   P  TP     S    +  +R   ++  +F+Y+L+ +Y
Sbjct: 232 ESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLY 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,930
Number of Sequences: 438
Number of extensions: 3604
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)