Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_O07
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   2.8  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    27   3.8  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   6.6  
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    26   6.6  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    26   6.6  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    25   8.7  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   8.7  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    25   8.7  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 568 AVSVRPQNPILWQTPFAPNSS 506
           A S  P NP  WQ P AP S+
Sbjct: 430 ASSAAPSNPAPWQQPAAPQSA 450


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +3

Query: 63  CVLCEFVLKEIDDQIK--DKHNDDEIKKAVHGICKHMPKSVSAECDQFVEKYADLV-ISL 233
           C  CE + + ++ ++K  +K N   I        K   +S     D+ V K  +   + L
Sbjct: 247 CAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVEL 306

Query: 234 LAQELDPSEVCEELK 278
           +A + DPSE+  ELK
Sbjct: 307 VAIKSDPSELSPELK 321


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 442 PNITLGVTQCWR 477
           P IT G+TQCWR
Sbjct: 189 PYITKGLTQCWR 200


>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 72  CEFVLKEIDDQIKDKHNDDEIKKAVHGICK 161
           CE  LKEI+ ++K   N ++I K +  + +
Sbjct: 30  CEATLKEIEQRLKSIKNIEKITKTIKTVAQ 59


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 9   PDATVNG--RRVSHKSQSNVCVLCEFVLKEIDDQIKDKHNDDEIKKAVHGICKHMPKSVS 182
           P  TV G  ++VS    S        +   IDD ++ +  D  I++++  +C+H PK + 
Sbjct: 93  PALTVTGAPKQVSTPDVSEKKPSMPVIQDPIDDSLEKE--DGLIRRSMTSLCRHGPKGMC 150

Query: 183 AEC 191
             C
Sbjct: 151 DYC 153


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 551 WSDRNRIRAHVPREEELTRTCSIYNI 628
           WS  +++R  V R  E   +CSI NI
Sbjct: 29  WSQIHKVRKLVDRSIERMESCSIINI 54


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 162  HMPKSVSAECDQFVEKYADLVISLLAQELDPSE 260
            HM  +  A+C +F+ KY D+ I     E++ SE
Sbjct: 2034 HMDNAHLAKCAEFINKYPDIDIDF---EIEDSE 2063


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 468 MLEVYGESIIHLIEEFGAKGV 530
           + EV GE+++ LI+ +G +GV
Sbjct: 165 VFEVLGENLLSLIQSYGHRGV 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,877
Number of Sequences: 5004
Number of extensions: 52442
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)